miRNA display CGI


Results 21 - 40 of 313 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9049 3' -61 NC_002512.2 + 217780 0.68 0.719416
Target:  5'- uCGC-CGGGGuCGCGGCcg-GCUGgCGGa -3'
miRNA:   3'- -GCGaGCUCCuGCGCCGcugCGAC-GCC- -5'
9049 3' -61 NC_002512.2 + 217597 0.7 0.597019
Target:  5'- cCGcCUCGGGGGuCGuCGGCGACuCggGCGGc -3'
miRNA:   3'- -GC-GAGCUCCU-GC-GCCGCUGcGa-CGCC- -5'
9049 3' -61 NC_002512.2 + 217105 0.7 0.596074
Target:  5'- gGCagCGGGGGCgccgccgaguccuGCGGCGGCaGCaGCGGg -3'
miRNA:   3'- gCGa-GCUCCUG-------------CGCCGCUG-CGaCGCC- -5'
9049 3' -61 NC_002512.2 + 215181 0.71 0.55668
Target:  5'- uGCUCGGggagcGGACGCGGgucuaccucuucguCGGCGggGCGGa -3'
miRNA:   3'- gCGAGCU-----CCUGCGCC--------------GCUGCgaCGCC- -5'
9049 3' -61 NC_002512.2 + 213834 0.68 0.732224
Target:  5'- aGuCUCGAGG-CGCGGCGcggggagaagauccCGCUGCc- -3'
miRNA:   3'- gC-GAGCUCCuGCGCCGCu-------------GCGACGcc -5'
9049 3' -61 NC_002512.2 + 213639 0.68 0.725837
Target:  5'- cCGC-CGcGGGCGaCGGCGACGacgacgaugacggagGCGGa -3'
miRNA:   3'- -GCGaGCuCCUGC-GCCGCUGCga-------------CGCC- -5'
9049 3' -61 NC_002512.2 + 212392 0.7 0.578179
Target:  5'- uCGagaUCGAGGAgGCGGcCGACGaggacgacggGCGGg -3'
miRNA:   3'- -GCg--AGCUCCUgCGCC-GCUGCga--------CGCC- -5'
9049 3' -61 NC_002512.2 + 211745 0.75 0.356901
Target:  5'- gGCcCGc-GACGCGGCccgGGCGCUGCGGg -3'
miRNA:   3'- gCGaGCucCUGCGCCG---CUGCGACGCC- -5'
9049 3' -61 NC_002512.2 + 211345 0.73 0.422035
Target:  5'- gCGCUgGGGGACGCGcGCGgccugaccgcccggcGCggcauGCUGCGGa -3'
miRNA:   3'- -GCGAgCUCCUGCGC-CGC---------------UG-----CGACGCC- -5'
9049 3' -61 NC_002512.2 + 209633 0.7 0.597019
Target:  5'- cCGgaCGAGGACGa--CGACGgCUGCGGc -3'
miRNA:   3'- -GCgaGCUCCUGCgccGCUGC-GACGCC- -5'
9049 3' -61 NC_002512.2 + 209279 0.75 0.364275
Target:  5'- -cUUCGAGGACGUGGa-GCGCUGCGu -3'
miRNA:   3'- gcGAGCUCCUGCGCCgcUGCGACGCc -5'
9049 3' -61 NC_002512.2 + 209189 0.67 0.75472
Target:  5'- -cCUCGuGGACGaggagacCGaGCGGCGCcUGCGGc -3'
miRNA:   3'- gcGAGCuCCUGC-------GC-CGCUGCG-ACGCC- -5'
9049 3' -61 NC_002512.2 + 208377 0.68 0.710189
Target:  5'- aCGa-CGAGGugGCc-CGACGCUGCGa -3'
miRNA:   3'- -GCgaGCUCCugCGccGCUGCGACGCc -5'
9049 3' -61 NC_002512.2 + 207924 0.67 0.790304
Target:  5'- aGCUCGAacGGGCcCGGUGGUGCU-CGGg -3'
miRNA:   3'- gCGAGCU--CCUGcGCCGCUGCGAcGCC- -5'
9049 3' -61 NC_002512.2 + 207582 0.69 0.660505
Target:  5'- gCGCUCcccucucccuggccuGcGACgGCGGCGGCuGCUGCGGc -3'
miRNA:   3'- -GCGAGcu-------------C-CUG-CGCCGCUG-CGACGCC- -5'
9049 3' -61 NC_002512.2 + 207511 0.66 0.838544
Target:  5'- cCGCgaccgacgaCGAGGACGgGGCcgcguccuccCGCUGCGa -3'
miRNA:   3'- -GCGa--------GCUCCUGCgCCGcu--------GCGACGCc -5'
9049 3' -61 NC_002512.2 + 206435 0.69 0.682194
Target:  5'- uGCguagCGAcGGCGCGGUGAaguaguCGCUGCGc -3'
miRNA:   3'- gCGa---GCUcCUGCGCCGCU------GCGACGCc -5'
9049 3' -61 NC_002512.2 + 205388 0.72 0.495595
Target:  5'- gGC-CcAGGAagGCGGCGGCGCaGCGGa -3'
miRNA:   3'- gCGaGcUCCUg-CGCCGCUGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 204812 0.72 0.499162
Target:  5'- cCGCguccCGGGGGCGCGGCGgcuccguccgggaggACGacgGCGGu -3'
miRNA:   3'- -GCGa---GCUCCUGCGCCGC---------------UGCga-CGCC- -5'
9049 3' -61 NC_002512.2 + 204638 0.73 0.426955
Target:  5'- gGgaCGGGGACcgggaCGGCGACGC-GCGGg -3'
miRNA:   3'- gCgaGCUCCUGc----GCCGCUGCGaCGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.