miRNA display CGI


Results 41 - 60 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9049 3' -61 NC_002512.2 + 202507 0.71 0.550181
Target:  5'- aGUUCGGcggcggaggcGGAgGCGGCGGCGgggGCGGa -3'
miRNA:   3'- gCGAGCU----------CCUgCGCCGCUGCga-CGCC- -5'
9049 3' -61 NC_002512.2 + 202473 0.68 0.710189
Target:  5'- aCGCUCGGcGACgGCGGCGAU-CUGCc- -3'
miRNA:   3'- -GCGAGCUcCUG-CGCCGCUGcGACGcc -5'
9049 3' -61 NC_002512.2 + 200831 0.69 0.69157
Target:  5'- aCGCgaaggucagCGGGGGCGCGGCG-CGUcucUGCc- -3'
miRNA:   3'- -GCGa--------GCUCCUGCGCCGCuGCG---ACGcc -5'
9049 3' -61 NC_002512.2 + 200350 0.68 0.728579
Target:  5'- --gUCGGcGGACGgGGgGACGggGCGGg -3'
miRNA:   3'- gcgAGCU-CCUGCgCCgCUGCgaCGCC- -5'
9049 3' -61 NC_002512.2 + 197901 0.66 0.823043
Target:  5'- -uCUCGGGGAgGgGGgGACGggacgUGCGGa -3'
miRNA:   3'- gcGAGCUCCUgCgCCgCUGCg----ACGCC- -5'
9049 3' -61 NC_002512.2 + 197839 0.71 0.563201
Target:  5'- uGCaUCGAGGG-GCGGCGGgaggcccucuucaacCGaCUGCGGg -3'
miRNA:   3'- gCG-AGCUCCUgCGCCGCU---------------GC-GACGCC- -5'
9049 3' -61 NC_002512.2 + 196407 0.73 0.418774
Target:  5'- gGCgCGGGGACGCGG-GGgGCgGCGGc -3'
miRNA:   3'- gCGaGCUCCUGCGCCgCUgCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 195789 0.66 0.830871
Target:  5'- uGgaCGuGGGCGUGuuGCucCGCUGCGGg -3'
miRNA:   3'- gCgaGCuCCUGCGC--CGcuGCGACGCC- -5'
9049 3' -61 NC_002512.2 + 194996 0.68 0.710189
Target:  5'- gCGCaaGAGGGCGaCGGCGGucccgGCgGCGGc -3'
miRNA:   3'- -GCGagCUCCUGC-GCCGCUg----CGaCGCC- -5'
9049 3' -61 NC_002512.2 + 194710 0.68 0.73767
Target:  5'- -aCUgGAGGACGCGGaggggGGCGCgGCuGGu -3'
miRNA:   3'- gcGAgCUCCUGCGCCg----CUGCGaCG-CC- -5'
9049 3' -61 NC_002512.2 + 193855 0.69 0.694375
Target:  5'- cCGCUCugcccaguacaucGGACGCGGCGguggacgACGCgggaGCGGg -3'
miRNA:   3'- -GCGAGcu-----------CCUGCGCCGC-------UGCGa---CGCC- -5'
9049 3' -61 NC_002512.2 + 193732 0.68 0.73767
Target:  5'- uGCUCGAGuuCGUgGGCGAaCGCggccucGCGGu -3'
miRNA:   3'- gCGAGCUCcuGCG-CCGCU-GCGa-----CGCC- -5'
9049 3' -61 NC_002512.2 + 192579 0.66 0.815066
Target:  5'- gGcCUCGGagcGGACcgucccgcugcuGCGGCGcGCGCgGCGGg -3'
miRNA:   3'- gC-GAGCU---CCUG------------CGCCGC-UGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 191267 0.72 0.469228
Target:  5'- aGggCGGGGAgGCGGCGACGgggaggGCGGc -3'
miRNA:   3'- gCgaGCUCCUgCGCCGCUGCga----CGCC- -5'
9049 3' -61 NC_002512.2 + 191034 0.67 0.79869
Target:  5'- uGCgaggCG-GGGCGCGGCGcACGUggacCGGu -3'
miRNA:   3'- gCGa---GCuCCUGCGCCGC-UGCGac--GCC- -5'
9049 3' -61 NC_002512.2 + 189897 0.75 0.349632
Target:  5'- gGCggCGAGGACgGCGGCGAgGacgGCGGc -3'
miRNA:   3'- gCGa-GCUCCUG-CGCCGCUgCga-CGCC- -5'
9049 3' -61 NC_002512.2 + 188918 0.68 0.73767
Target:  5'- gCGgUCGGagagucccGGugGCGG-GGCGCgGCGGu -3'
miRNA:   3'- -GCgAGCU--------CCugCGCCgCUGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 188631 0.76 0.294686
Target:  5'- gCGCUCGggccgcaAGGGCGcCGGCGGCgGCgGCGGc -3'
miRNA:   3'- -GCGAGC-------UCCUGC-GCCGCUG-CGaCGCC- -5'
9049 3' -61 NC_002512.2 + 184982 0.7 0.606475
Target:  5'- gCGCggcCGucGACGUGGa-GCGCUGCGGc -3'
miRNA:   3'- -GCGa--GCucCUGCGCCgcUGCGACGCC- -5'
9049 3' -61 NC_002512.2 + 184530 0.68 0.719416
Target:  5'- aGCagucgCGGGGucaGcCGGCGGCGCgggccgGCGGa -3'
miRNA:   3'- gCGa----GCUCCug-C-GCCGCUGCGa-----CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.