miRNA display CGI


Results 41 - 60 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9049 3' -61 NC_002512.2 + 7453 0.66 0.815066
Target:  5'- gGCcCGGGGGaagcCGCGGCG-CgGCUGcCGGc -3'
miRNA:   3'- gCGaGCUCCU----GCGCCGCuG-CGAC-GCC- -5'
9049 3' -61 NC_002512.2 + 136193 0.66 0.806946
Target:  5'- uCGC-CG-GGAuCGCGuCGACGCcgGCGGc -3'
miRNA:   3'- -GCGaGCuCCU-GCGCcGCUGCGa-CGCC- -5'
9049 3' -61 NC_002512.2 + 21063 0.66 0.806946
Target:  5'- gCGCgUGAGGGCGCacgGGCGGCggucccGCUcCGGg -3'
miRNA:   3'- -GCGaGCUCCUGCG---CCGCUG------CGAcGCC- -5'
9049 3' -61 NC_002512.2 + 222304 0.66 0.806946
Target:  5'- cCGCUgcCGccGGAgGCGGUaccgGAgGCUGCGGc -3'
miRNA:   3'- -GCGA--GCu-CCUgCGCCG----CUgCGACGCC- -5'
9049 3' -61 NC_002512.2 + 158928 0.66 0.806946
Target:  5'- gGCUucggCGGGGGCGcCGGCGGCcucucggucaGCaacgGCGGc -3'
miRNA:   3'- gCGA----GCUCCUGC-GCCGCUG----------CGa---CGCC- -5'
9049 3' -61 NC_002512.2 + 157128 0.66 0.806946
Target:  5'- gGCgUCGGGGGuCgGCGGCGGgccCGggGCGGg -3'
miRNA:   3'- gCG-AGCUCCU-G-CGCCGCU---GCgaCGCC- -5'
9049 3' -61 NC_002512.2 + 128849 0.66 0.806946
Target:  5'- cCGCUCGGGcGccGCGCGGgcccUGGUGCUGCGc -3'
miRNA:   3'- -GCGAGCUC-C--UGCGCC----GCUGCGACGCc -5'
9049 3' -61 NC_002512.2 + 108595 0.66 0.806946
Target:  5'- gGCccCGGGGA-GCGGCGGC-C-GCGGg -3'
miRNA:   3'- gCGa-GCUCCUgCGCCGCUGcGaCGCC- -5'
9049 3' -61 NC_002512.2 + 28251 0.66 0.806946
Target:  5'- uCGCgccgCGAGuACGaCGGCGccuaccgcucgGCGCUGgCGGa -3'
miRNA:   3'- -GCGa---GCUCcUGC-GCCGC-----------UGCGAC-GCC- -5'
9049 3' -61 NC_002512.2 + 31811 0.66 0.806946
Target:  5'- aCGC-CG-GGGCGCGGUcgagggGACGC-GCGa -3'
miRNA:   3'- -GCGaGCuCCUGCGCCG------CUGCGaCGCc -5'
9049 3' -61 NC_002512.2 + 10471 0.66 0.806946
Target:  5'- cCGC-CGccccGGGCGUgGGCGuCGCgGCGGg -3'
miRNA:   3'- -GCGaGCu---CCUGCG-CCGCuGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 132011 0.66 0.806946
Target:  5'- gCGCcggGGGGACcucgGCGGCGACGUcGuCGGc -3'
miRNA:   3'- -GCGag-CUCCUG----CGCCGCUGCGaC-GCC- -5'
9049 3' -61 NC_002512.2 + 75244 0.66 0.805305
Target:  5'- uCGCUCG-GGACgGCGGUuuuugaaaaagcGCGCgaGCGGg -3'
miRNA:   3'- -GCGAGCuCCUG-CGCCGc-----------UGCGa-CGCC- -5'
9049 3' -61 NC_002512.2 + 157265 0.67 0.79869
Target:  5'- cCGg-CGAGGACGUGuucGUGGCGCgcagcaaGCGGg -3'
miRNA:   3'- -GCgaGCUCCUGCGC---CGCUGCGa------CGCC- -5'
9049 3' -61 NC_002512.2 + 191034 0.67 0.79869
Target:  5'- uGCgaggCG-GGGCGCGGCGcACGUggacCGGu -3'
miRNA:   3'- gCGa---GCuCCUGCGCCGC-UGCGac--GCC- -5'
9049 3' -61 NC_002512.2 + 96206 0.67 0.79869
Target:  5'- gGCcgCGAGGuCGgccaCGGCGGCcGCgGCGGc -3'
miRNA:   3'- gCGa-GCUCCuGC----GCCGCUG-CGaCGCC- -5'
9049 3' -61 NC_002512.2 + 47952 0.67 0.79869
Target:  5'- aGCcCGAGGAacgagGUGGCGGagGCcGCGGa -3'
miRNA:   3'- gCGaGCUCCUg----CGCCGCUg-CGaCGCC- -5'
9049 3' -61 NC_002512.2 + 81987 0.67 0.79869
Target:  5'- gGCggCGGGGGCGUcucgggGGCGGuCGCgGCGa -3'
miRNA:   3'- gCGa-GCUCCUGCG------CCGCU-GCGaCGCc -5'
9049 3' -61 NC_002512.2 + 100062 0.67 0.79869
Target:  5'- uCGCgaCGGGGGcCGCGGgccgggGACGgaGCGGu -3'
miRNA:   3'- -GCGa-GCUCCU-GCGCCg-----CUGCgaCGCC- -5'
9049 3' -61 NC_002512.2 + 43033 0.67 0.79869
Target:  5'- aGgUCGAGG-CGCagguccucGGCGACGC-GCaGGg -3'
miRNA:   3'- gCgAGCUCCuGCG--------CCGCUGCGaCG-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.