Results 1 - 20 of 114 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9049 | 5' | -52.3 | NC_002512.2 | + | 30820 | 0.66 | 0.99311 |
Target: 5'- gGCCugGACUACCaacgGcUGAGCACCUUc -3' miRNA: 3'- gCGGcgUUGAUGGa---CuACUUGUGGAG- -5' |
|||||||
9049 | 5' | -52.3 | NC_002512.2 | + | 55438 | 0.66 | 0.994823 |
Target: 5'- uCGUCGacgAACUACgUGGUGAcCACCg- -3' miRNA: 3'- -GCGGCg--UUGAUGgACUACUuGUGGag -5' |
|||||||
9049 | 5' | -52.3 | NC_002512.2 | + | 72793 | 0.66 | 0.994016 |
Target: 5'- uCGCCGgGACggGCCcGccGUGGGCGCCg- -3' miRNA: 3'- -GCGGCgUUGa-UGGaC--UACUUGUGGag -5' |
|||||||
9049 | 5' | -52.3 | NC_002512.2 | + | 23693 | 0.66 | 0.992098 |
Target: 5'- cCGCCGCuGCUuCCUGGUGuccguGCcCCa- -3' miRNA: 3'- -GCGGCGuUGAuGGACUACu----UGuGGag -5' |
|||||||
9049 | 5' | -52.3 | NC_002512.2 | + | 62925 | 0.66 | 0.99311 |
Target: 5'- gCGCCaGCuGCUGCUUGuccAUGAACAUC-Cg -3' miRNA: 3'- -GCGG-CGuUGAUGGAC---UACUUGUGGaG- -5' |
|||||||
9049 | 5' | -52.3 | NC_002512.2 | + | 26694 | 0.66 | 0.992818 |
Target: 5'- aCGCCGUgcuggcggugaccuGGCUGgcgucCCUGAUGuGCGCgUCg -3' miRNA: 3'- -GCGGCG--------------UUGAU-----GGACUACuUGUGgAG- -5' |
|||||||
9049 | 5' | -52.3 | NC_002512.2 | + | 126364 | 0.66 | 0.99311 |
Target: 5'- gGCgGCAACUuCCUGcUGGuCACCa- -3' miRNA: 3'- gCGgCGUUGAuGGACuACUuGUGGag -5' |
|||||||
9049 | 5' | -52.3 | NC_002512.2 | + | 14834 | 0.66 | 0.99311 |
Target: 5'- aCGCCGcCGACga-C-GGUGAGCuCCUCg -3' miRNA: 3'- -GCGGC-GUUGaugGaCUACUUGuGGAG- -5' |
|||||||
9049 | 5' | -52.3 | NC_002512.2 | + | 95648 | 0.66 | 0.99311 |
Target: 5'- -uCCGU--CUGCCUGAggagGAACGCCg- -3' miRNA: 3'- gcGGCGuuGAUGGACUa---CUUGUGGag -5' |
|||||||
9049 | 5' | -52.3 | NC_002512.2 | + | 123939 | 0.66 | 0.994016 |
Target: 5'- gGCCGUcaGACUcguGCCgGcgGGAC-CCUCg -3' miRNA: 3'- gCGGCG--UUGA---UGGaCuaCUUGuGGAG- -5' |
|||||||
9049 | 5' | -52.3 | NC_002512.2 | + | 100765 | 0.66 | 0.994823 |
Target: 5'- aGCUGguGCUcggaGCgCUGcacccgGAACGCCUCg -3' miRNA: 3'- gCGGCguUGA----UG-GACua----CUUGUGGAG- -5' |
|||||||
9049 | 5' | -52.3 | NC_002512.2 | + | 118489 | 0.66 | 0.993014 |
Target: 5'- gCGCCG-AGCUGCCgggGcgGGACGgcuacgaggucuuCCUCg -3' miRNA: 3'- -GCGGCgUUGAUGGa--CuaCUUGU-------------GGAG- -5' |
|||||||
9049 | 5' | -52.3 | NC_002512.2 | + | 41336 | 0.66 | 0.990972 |
Target: 5'- cCGCCGgAGCUgcccgaguugGCCUGGUaguuggaguugaGGACGCCg- -3' miRNA: 3'- -GCGGCgUUGA----------UGGACUA------------CUUGUGGag -5' |
|||||||
9049 | 5' | -52.3 | NC_002512.2 | + | 24502 | 0.66 | 0.990972 |
Target: 5'- gCGCCGCcGCcuuCCUGGgccUGAcCGCCUUc -3' miRNA: 3'- -GCGGCGuUGau-GGACU---ACUuGUGGAG- -5' |
|||||||
9049 | 5' | -52.3 | NC_002512.2 | + | 54719 | 0.66 | 0.992098 |
Target: 5'- cCGCCGUacGACaucucggACCUGAaggccuucugcgUGGACACCa- -3' miRNA: 3'- -GCGGCG--UUGa------UGGACU------------ACUUGUGGag -5' |
|||||||
9049 | 5' | -52.3 | NC_002512.2 | + | 137941 | 0.66 | 0.990972 |
Target: 5'- aGCgGaucacCUGCCUGcgGAACAgCUCg -3' miRNA: 3'- gCGgCguu--GAUGGACuaCUUGUgGAG- -5' |
|||||||
9049 | 5' | -52.3 | NC_002512.2 | + | 124817 | 0.66 | 0.993014 |
Target: 5'- cCGCCGgcuucuuCGGCUGCgUGccGGACACCg- -3' miRNA: 3'- -GCGGC-------GUUGAUGgACuaCUUGUGGag -5' |
|||||||
9049 | 5' | -52.3 | NC_002512.2 | + | 36814 | 0.66 | 0.991882 |
Target: 5'- uCGCCGCAGCacaucuccgUGCCguuggggaacugGggGGACACgUCg -3' miRNA: 3'- -GCGGCGUUG---------AUGGa-----------CuaCUUGUGgAG- -5' |
|||||||
9049 | 5' | -52.3 | NC_002512.2 | + | 122687 | 0.66 | 0.990972 |
Target: 5'- gGCCGCGGCccGgCUGGUGcccguGCACgUCg -3' miRNA: 3'- gCGGCGUUGa-UgGACUACu----UGUGgAG- -5' |
|||||||
9049 | 5' | -52.3 | NC_002512.2 | + | 225803 | 0.66 | 0.994823 |
Target: 5'- gGCCGCgGGCgGCCgGGUGGccugGgACCUCg -3' miRNA: 3'- gCGGCG-UUGaUGGaCUACU----UgUGGAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home