miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9049 5' -52.3 NC_002512.2 + 113549 0.69 0.962164
Target:  5'- gGCCGCGuugaAC-GCCUGGUGGuCGCCg- -3'
miRNA:   3'- gCGGCGU----UGaUGGACUACUuGUGGag -5'
9049 5' -52.3 NC_002512.2 + 121142 0.7 0.932335
Target:  5'- gCGCCGCGcACUGCCUccgcGA-GAAgGCCUg -3'
miRNA:   3'- -GCGGCGU-UGAUGGA----CUaCUUgUGGAg -5'
9049 5' -52.3 NC_002512.2 + 122185 0.7 0.942031
Target:  5'- gCGCCaCGACUGCgUGGUGGuccACACC-Ca -3'
miRNA:   3'- -GCGGcGUUGAUGgACUACU---UGUGGaG- -5'
9049 5' -52.3 NC_002512.2 + 107345 0.7 0.942031
Target:  5'- cCGUCGCGGCgaGCCUGAUGuccagcggcGCGCCg- -3'
miRNA:   3'- -GCGGCGUUGa-UGGACUACu--------UGUGGag -5'
9049 5' -52.3 NC_002512.2 + 102612 0.69 0.950777
Target:  5'- cCGCCGcCAACgcCCgGggGAACGCCgUCg -3'
miRNA:   3'- -GCGGC-GUUGauGGaCuaCUUGUGG-AG- -5'
9049 5' -52.3 NC_002512.2 + 48225 0.69 0.9548
Target:  5'- gGgCGCGACUACCUGuaccgGGACGCg-- -3'
miRNA:   3'- gCgGCGUUGAUGGACua---CUUGUGgag -5'
9049 5' -52.3 NC_002512.2 + 39769 0.69 0.958594
Target:  5'- aGCaCGCAGCUGCCgugGA--AGCGCCg- -3'
miRNA:   3'- gCG-GCGUUGAUGGa--CUacUUGUGGag -5'
9049 5' -52.3 NC_002512.2 + 119431 0.69 0.962164
Target:  5'- gGaCCGCGGggACCUGGUGcGCGuCCUCc -3'
miRNA:   3'- gC-GGCGUUgaUGGACUACuUGU-GGAG- -5'
9049 5' -52.3 NC_002512.2 + 54914 0.69 0.962164
Target:  5'- uGCUGC-GCUGCCUG-UGGGCGCaguUCa -3'
miRNA:   3'- gCGGCGuUGAUGGACuACUUGUGg--AG- -5'
9049 5' -52.3 NC_002512.2 + 66404 0.7 0.932335
Target:  5'- aGCUGCGugUACgUGAUGucCAUCUUg -3'
miRNA:   3'- gCGGCGUugAUGgACUACuuGUGGAG- -5'
9049 5' -52.3 NC_002512.2 + 22567 0.7 0.927126
Target:  5'- uCGCCGguGgUG-CUGGUGAACGgCUCg -3'
miRNA:   3'- -GCGGCguUgAUgGACUACUUGUgGAG- -5'
9049 5' -52.3 NC_002512.2 + 81327 0.71 0.915987
Target:  5'- uGgCGCAGgauCUGguauuCCUGGUGGGCGCCUCc -3'
miRNA:   3'- gCgGCGUU---GAU-----GGACUACUUGUGGAG- -5'
9049 5' -52.3 NC_002512.2 + 96002 0.76 0.708405
Target:  5'- gCGCCGCGACcGCCagGcgGAACGCCcCg -3'
miRNA:   3'- -GCGGCGUUGaUGGa-CuaCUUGUGGaG- -5'
9049 5' -52.3 NC_002512.2 + 118980 0.74 0.794032
Target:  5'- uGCUGCAgaACUGCCUGcgGcuggccuccgccaAGCGCCUCc -3'
miRNA:   3'- gCGGCGU--UGAUGGACuaC-------------UUGUGGAG- -5'
9049 5' -52.3 NC_002512.2 + 60814 0.73 0.846401
Target:  5'- gGCCGCGACgccGCCgccGcgGAGCcCCUCg -3'
miRNA:   3'- gCGGCGUUGa--UGGa--CuaCUUGuGGAG- -5'
9049 5' -52.3 NC_002512.2 + 51982 0.72 0.862068
Target:  5'- aCGCUGCuaagGACgacgaACCUGAUcGAGCACCUa -3'
miRNA:   3'- -GCGGCG----UUGa----UGGACUA-CUUGUGGAg -5'
9049 5' -52.3 NC_002512.2 + 4169 0.72 0.879763
Target:  5'- uCGCCGCGGCUcgcgggcgacacauCCUGA-GGACGCCg- -3'
miRNA:   3'- -GCGGCGUUGAu-------------GGACUaCUUGUGGag -5'
9049 5' -52.3 NC_002512.2 + 23772 0.71 0.897489
Target:  5'- cCGCUGCGcCUGacCCUGGUGuccCACCUCc -3'
miRNA:   3'- -GCGGCGUuGAU--GGACUACuu-GUGGAG- -5'
9049 5' -52.3 NC_002512.2 + 39825 0.71 0.903891
Target:  5'- gGCCGCGGCcaGCUcgugGAUGAACaugACCUCg -3'
miRNA:   3'- gCGGCGUUGa-UGGa---CUACUUG---UGGAG- -5'
9049 5' -52.3 NC_002512.2 + 113635 0.71 0.910058
Target:  5'- -uCCGCAGC-ACCUGcagGGugGCCUCg -3'
miRNA:   3'- gcGGCGUUGaUGGACua-CUugUGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.