miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9049 5' -52.3 NC_002512.2 + 4169 0.72 0.879763
Target:  5'- uCGCCGCGGCUcgcgggcgacacauCCUGA-GGACGCCg- -3'
miRNA:   3'- -GCGGCGUUGAu-------------GGACUaCUUGUGGag -5'
9049 5' -52.3 NC_002512.2 + 13383 0.76 0.678053
Target:  5'- uGCCGCGguucguccGCUACCUGAcGcgcuGCGCCUCc -3'
miRNA:   3'- gCGGCGU--------UGAUGGACUaCu---UGUGGAG- -5'
9049 5' -52.3 NC_002512.2 + 14834 0.66 0.99311
Target:  5'- aCGCCGcCGACga-C-GGUGAGCuCCUCg -3'
miRNA:   3'- -GCGGC-GUUGaugGaCUACUUGuGGAG- -5'
9049 5' -52.3 NC_002512.2 + 22567 0.7 0.927126
Target:  5'- uCGCCGguGgUG-CUGGUGAACGgCUCg -3'
miRNA:   3'- -GCGGCguUgAUgGACUACUUGUgGAG- -5'
9049 5' -52.3 NC_002512.2 + 23693 0.66 0.992098
Target:  5'- cCGCCGCuGCUuCCUGGUGuccguGCcCCa- -3'
miRNA:   3'- -GCGGCGuUGAuGGACUACu----UGuGGag -5'
9049 5' -52.3 NC_002512.2 + 23772 0.71 0.897489
Target:  5'- cCGCUGCGcCUGacCCUGGUGuccCACCUCc -3'
miRNA:   3'- -GCGGCGUuGAU--GGACUACuu-GUGGAG- -5'
9049 5' -52.3 NC_002512.2 + 24502 0.66 0.990972
Target:  5'- gCGCCGCcGCcuuCCUGGgccUGAcCGCCUUc -3'
miRNA:   3'- -GCGGCGuUGau-GGACU---ACUuGUGGAG- -5'
9049 5' -52.3 NC_002512.2 + 26694 0.66 0.992818
Target:  5'- aCGCCGUgcuggcggugaccuGGCUGgcgucCCUGAUGuGCGCgUCg -3'
miRNA:   3'- -GCGGCG--------------UUGAU-----GGACUACuUGUGgAG- -5'
9049 5' -52.3 NC_002512.2 + 30782 0.67 0.989722
Target:  5'- uGCUGCAgagggugaACguggACCUGgcGGcCACCUCg -3'
miRNA:   3'- gCGGCGU--------UGa---UGGACuaCUuGUGGAG- -5'
9049 5' -52.3 NC_002512.2 + 30820 0.66 0.99311
Target:  5'- gGCCugGACUACCaacgGcUGAGCACCUUc -3'
miRNA:   3'- gCGGcgUUGAUGGa---CuACUUGUGGAG- -5'
9049 5' -52.3 NC_002512.2 + 36814 0.66 0.991882
Target:  5'- uCGCCGCAGCacaucuccgUGCCguuggggaacugGggGGACACgUCg -3'
miRNA:   3'- -GCGGCGUUG---------AUGGa-----------CuaCUUGUGgAG- -5'
9049 5' -52.3 NC_002512.2 + 39769 0.69 0.958594
Target:  5'- aGCaCGCAGCUGCCgugGA--AGCGCCg- -3'
miRNA:   3'- gCG-GCGUUGAUGGa--CUacUUGUGGag -5'
9049 5' -52.3 NC_002512.2 + 39825 0.71 0.903891
Target:  5'- gGCCGCGGCcaGCUcgugGAUGAACaugACCUCg -3'
miRNA:   3'- gCGGCGUUGa-UGGa---CUACUUG---UGGAG- -5'
9049 5' -52.3 NC_002512.2 + 41123 0.67 0.989722
Target:  5'- cCGCCGgAACcGCCcu-UGGACACCa- -3'
miRNA:   3'- -GCGGCgUUGaUGGacuACUUGUGGag -5'
9049 5' -52.3 NC_002512.2 + 41336 0.66 0.990972
Target:  5'- cCGCCGgAGCUgcccgaguugGCCUGGUaguuggaguugaGGACGCCg- -3'
miRNA:   3'- -GCGGCgUUGA----------UGGACUA------------CUUGUGGag -5'
9049 5' -52.3 NC_002512.2 + 42139 0.69 0.96865
Target:  5'- aCGCaaCGCAGCUGCUgGAUGGcgGCCUUg -3'
miRNA:   3'- -GCG--GCGUUGAUGGaCUACUugUGGAG- -5'
9049 5' -52.3 NC_002512.2 + 45438 0.67 0.988341
Target:  5'- cCGCgGCGACUcCCUGuccGACGCCg- -3'
miRNA:   3'- -GCGgCGUUGAuGGACuacUUGUGGag -5'
9049 5' -52.3 NC_002512.2 + 46411 0.67 0.988341
Target:  5'- gGcCCGCAGCacgGCCuUGGUGGcgGCGCCg- -3'
miRNA:   3'- gC-GGCGUUGa--UGG-ACUACU--UGUGGag -5'
9049 5' -52.3 NC_002512.2 + 46861 0.68 0.981339
Target:  5'- gGCCguGCAACUGCa-GAcGGugACCUCg -3'
miRNA:   3'- gCGG--CGUUGAUGgaCUaCUugUGGAG- -5'
9049 5' -52.3 NC_002512.2 + 47005 0.68 0.971578
Target:  5'- gGCCGCuuCUugCUGGcggcgGAGCugCUg -3'
miRNA:   3'- gCGGCGuuGAugGACUa----CUUGugGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.