miRNA display CGI


Results 1 - 20 of 114 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9049 5' -52.3 NC_002512.2 + 145586 1.09 0.009009
Target:  5'- gCGCCGCAACUACCUGAUGAACACCUCc -3'
miRNA:   3'- -GCGGCGUUGAUGGACUACUUGUGGAG- -5'
9049 5' -52.3 NC_002512.2 + 91150 0.8 0.467711
Target:  5'- gCGCUGCGGCacacCCUGGUGAGCACCg- -3'
miRNA:   3'- -GCGGCGUUGau--GGACUACUUGUGGag -5'
9049 5' -52.3 NC_002512.2 + 94431 0.79 0.505928
Target:  5'- gGCCGCGuCgaacGCCUGGUGGACgGCCUCg -3'
miRNA:   3'- gCGGCGUuGa---UGGACUACUUG-UGGAG- -5'
9049 5' -52.3 NC_002512.2 + 222649 0.78 0.555456
Target:  5'- cCGCCGCGACggccgGCCgggccGAgGGGCGCCUCg -3'
miRNA:   3'- -GCGGCGUUGa----UGGa----CUaCUUGUGGAG- -5'
9049 5' -52.3 NC_002512.2 + 211458 0.76 0.667848
Target:  5'- gCGCCuGCGGCUGCCccgGAUccGACACCUCg -3'
miRNA:   3'- -GCGG-CGUUGAUGGa--CUAc-UUGUGGAG- -5'
9049 5' -52.3 NC_002512.2 + 13383 0.76 0.678053
Target:  5'- uGCCGCGguucguccGCUACCUGAcGcgcuGCGCCUCc -3'
miRNA:   3'- gCGGCGU--------UGAUGGACUaCu---UGUGGAG- -5'
9049 5' -52.3 NC_002512.2 + 96002 0.76 0.708405
Target:  5'- gCGCCGCGACcGCCagGcgGAACGCCcCg -3'
miRNA:   3'- -GCGGCGUUGaUGGa-CuaCUUGUGGaG- -5'
9049 5' -52.3 NC_002512.2 + 146971 0.75 0.728329
Target:  5'- gGCCGCGgccgagacuuccGCUGCCUGAccaccGAGCACCa- -3'
miRNA:   3'- gCGGCGU------------UGAUGGACUa----CUUGUGGag -5'
9049 5' -52.3 NC_002512.2 + 155347 0.75 0.747919
Target:  5'- uCGCCGCGGCcGCCUGGcUG--UACCUCg -3'
miRNA:   3'- -GCGGCGUUGaUGGACU-ACuuGUGGAG- -5'
9049 5' -52.3 NC_002512.2 + 118980 0.74 0.794032
Target:  5'- uGCUGCAgaACUGCCUGcgGcuggccuccgccaAGCGCCUCc -3'
miRNA:   3'- gCGGCGU--UGAUGGACuaC-------------UUGUGGAG- -5'
9049 5' -52.3 NC_002512.2 + 158149 0.74 0.803936
Target:  5'- -uCCGCGACUACCUGA---GCACCa- -3'
miRNA:   3'- gcGGCGUUGAUGGACUacuUGUGGag -5'
9049 5' -52.3 NC_002512.2 + 145321 0.73 0.812775
Target:  5'- -uCCGCAACUACgUcGAggucGAGCGCCUCg -3'
miRNA:   3'- gcGGCGUUGAUGgA-CUa---CUUGUGGAG- -5'
9049 5' -52.3 NC_002512.2 + 182522 0.73 0.82995
Target:  5'- gCGCCGCAGCguCCggugGGUGAACgacacccggaagGCCUCg -3'
miRNA:   3'- -GCGGCGUUGauGGa---CUACUUG------------UGGAG- -5'
9049 5' -52.3 NC_002512.2 + 60814 0.73 0.846401
Target:  5'- gGCCGCGACgccGCCgccGcgGAGCcCCUCg -3'
miRNA:   3'- gCGGCGUUGa--UGGa--CuaCUUGuGGAG- -5'
9049 5' -52.3 NC_002512.2 + 136554 0.73 0.854336
Target:  5'- uGCUGCAGg-ACCUGGUGAAgACCa- -3'
miRNA:   3'- gCGGCGUUgaUGGACUACUUgUGGag -5'
9049 5' -52.3 NC_002512.2 + 148268 0.72 0.862068
Target:  5'- aCGUgGCGACggcCCUGGccgacGAGCACCUCa -3'
miRNA:   3'- -GCGgCGUUGau-GGACUa----CUUGUGGAG- -5'
9049 5' -52.3 NC_002512.2 + 51982 0.72 0.862068
Target:  5'- aCGCUGCuaagGACgacgaACCUGAUcGAGCACCUa -3'
miRNA:   3'- -GCGGCG----UUGa----UGGACUA-CUUGUGGAg -5'
9049 5' -52.3 NC_002512.2 + 4169 0.72 0.879763
Target:  5'- uCGCCGCGGCUcgcgggcgacacauCCUGA-GGACGCCg- -3'
miRNA:   3'- -GCGGCGUUGAu-------------GGACUaCUUGUGGag -5'
9049 5' -52.3 NC_002512.2 + 209853 0.72 0.890854
Target:  5'- gGCUcuuCGGCUGCCUGcgGGACGCCg- -3'
miRNA:   3'- gCGGc--GUUGAUGGACuaCUUGUGGag -5'
9049 5' -52.3 NC_002512.2 + 165309 0.71 0.897489
Target:  5'- gCGCCGCucgucgcugugcGGCUacgGCCUGggGAcaucccGCACCUCu -3'
miRNA:   3'- -GCGGCG------------UUGA---UGGACuaCU------UGUGGAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.