miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9051 3' -54.9 NC_002512.2 + 119765 0.66 0.97699
Target:  5'- ---aGCGAC-GCGUCGcGGUCGAcgGCGg -3'
miRNA:   3'- aaggCGUUGaUGCAGCuCCAGCU--CGC- -5'
9051 3' -54.9 NC_002512.2 + 221255 0.66 0.97699
Target:  5'- -gCCGCGGCggaaGUCGGGGgacgCGGGgCGc -3'
miRNA:   3'- aaGGCGUUGaug-CAGCUCCa---GCUC-GC- -5'
9051 3' -54.9 NC_002512.2 + 104926 0.66 0.97699
Target:  5'- gUCCGCGACggccuccuCGUCcGGcGUCGGcGCGg -3'
miRNA:   3'- aAGGCGUUGau------GCAGcUC-CAGCU-CGC- -5'
9051 3' -54.9 NC_002512.2 + 79216 0.66 0.97699
Target:  5'- -aCCGCcGCgcccGCGgaccUCGAGGcUCGAGCu -3'
miRNA:   3'- aaGGCGuUGa---UGC----AGCUCC-AGCUCGc -5'
9051 3' -54.9 NC_002512.2 + 170793 0.66 0.97699
Target:  5'- --gCGCGACgacgGCGgCGAGGg-GAGCGa -3'
miRNA:   3'- aagGCGUUGa---UGCaGCUCCagCUCGC- -5'
9051 3' -54.9 NC_002512.2 + 73110 0.66 0.97699
Target:  5'- ---gGCGACgaaaACGUCaGGGGUCGuGCGc -3'
miRNA:   3'- aaggCGUUGa---UGCAG-CUCCAGCuCGC- -5'
9051 3' -54.9 NC_002512.2 + 7312 0.66 0.974532
Target:  5'- cUCCGCGACgGCGggccgCGGcgggacGGUCGGGUc -3'
miRNA:   3'- aAGGCGUUGaUGCa----GCU------CCAGCUCGc -5'
9051 3' -54.9 NC_002512.2 + 189857 0.66 0.974532
Target:  5'- gUCCGCAACcuCGUCGcGcGUCGgagacGGCGg -3'
miRNA:   3'- aAGGCGUUGauGCAGCuC-CAGC-----UCGC- -5'
9051 3' -54.9 NC_002512.2 + 156719 0.66 0.974532
Target:  5'- gUCCGCAGCUGgucucgucCGUCGucuGGUacuucaaccgcaUGGGCGu -3'
miRNA:   3'- aAGGCGUUGAU--------GCAGCu--CCA------------GCUCGC- -5'
9051 3' -54.9 NC_002512.2 + 6794 0.66 0.974276
Target:  5'- aUCUGUAACUGcCGUCucGGUcaaccgccuucucCGAGCGg -3'
miRNA:   3'- aAGGCGUUGAU-GCAGcuCCA-------------GCUCGC- -5'
9051 3' -54.9 NC_002512.2 + 182080 0.66 0.971887
Target:  5'- -gCCGCGGCUc---CGGGGUCuGGGCGa -3'
miRNA:   3'- aaGGCGUUGAugcaGCUCCAG-CUCGC- -5'
9051 3' -54.9 NC_002512.2 + 184975 0.66 0.971887
Target:  5'- gUCCGCcGCgcggcCGUCGAcGUgGAGCGc -3'
miRNA:   3'- aAGGCGuUGau---GCAGCUcCAgCUCGC- -5'
9051 3' -54.9 NC_002512.2 + 199985 0.66 0.971887
Target:  5'- gUCCGC-GCgccCGgCGGGGaCGAGCGg -3'
miRNA:   3'- aAGGCGuUGau-GCaGCUCCaGCUCGC- -5'
9051 3' -54.9 NC_002512.2 + 159339 0.66 0.969051
Target:  5'- -cCCGCccgucCUuuauguaucgGCGUCGGGGUCgGGGCGu -3'
miRNA:   3'- aaGGCGuu---GA----------UGCAGCUCCAG-CUCGC- -5'
9051 3' -54.9 NC_002512.2 + 24685 0.66 0.969051
Target:  5'- -gCCGCucggGCgggggucuCGUCGAGGacgCGGGCGa -3'
miRNA:   3'- aaGGCGu---UGau------GCAGCUCCa--GCUCGC- -5'
9051 3' -54.9 NC_002512.2 + 155356 0.66 0.969051
Target:  5'- --gCGUAACacgagcgGCGcUCGAGGUCgGGGCGg -3'
miRNA:   3'- aagGCGUUGa------UGC-AGCUCCAG-CUCGC- -5'
9051 3' -54.9 NC_002512.2 + 192597 0.66 0.966016
Target:  5'- -cCCGCuGCUGCGgcgcgCGcGG-CGGGCGa -3'
miRNA:   3'- aaGGCGuUGAUGCa----GCuCCaGCUCGC- -5'
9051 3' -54.9 NC_002512.2 + 191450 0.66 0.966016
Target:  5'- cUCCGCccgggGCGUUGAGGUgggcCGAGUa -3'
miRNA:   3'- aAGGCGuuga-UGCAGCUCCA----GCUCGc -5'
9051 3' -54.9 NC_002512.2 + 99494 0.67 0.962778
Target:  5'- aUCCGCAAg-GCGUgccagaCGGGGUUG-GCGg -3'
miRNA:   3'- aAGGCGUUgaUGCA------GCUCCAGCuCGC- -5'
9051 3' -54.9 NC_002512.2 + 95267 0.67 0.962778
Target:  5'- --gCGCGGCUccugaACGgCGGGGUCGGGUu -3'
miRNA:   3'- aagGCGUUGA-----UGCaGCUCCAGCUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.