miRNA display CGI


Results 1 - 20 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9067 5' -58.6 NC_002512.2 + 28579 0.66 0.883786
Target:  5'- aGACGGAgcUGaUCCGaGCGguGCgCGUCa -3'
miRNA:   3'- gCUGCCU--GC-AGGCgCGCguCGaGUAG- -5'
9067 5' -58.6 NC_002512.2 + 91693 0.66 0.876382
Target:  5'- cCGACGGuaggAUGUCCGCGaugcacaCGCAGCcCGg- -3'
miRNA:   3'- -GCUGCC----UGCAGGCGC-------GCGUCGaGUag -5'
9067 5' -58.6 NC_002512.2 + 139023 0.66 0.896619
Target:  5'- cCGACGG-CGg-CGCG-GaCGGCUCGUCc -3'
miRNA:   3'- -GCUGCCuGCagGCGCgC-GUCGAGUAG- -5'
9067 5' -58.6 NC_002512.2 + 44186 0.66 0.908618
Target:  5'- gCGGCGGugGUCgCGCaGCGaGGCgCAg- -3'
miRNA:   3'- -GCUGCCugCAG-GCG-CGCgUCGaGUag -5'
9067 5' -58.6 NC_002512.2 + 40646 0.66 0.877746
Target:  5'- cCGACGGugACGUCCGCGa-CGGCgacggacggauccgaCGUCg -3'
miRNA:   3'- -GCUGCC--UGCAGGCGCgcGUCGa--------------GUAG- -5'
9067 5' -58.6 NC_002512.2 + 130632 0.66 0.895997
Target:  5'- cCGGCguccucgGGGCGUCCcucgacuucuGCGCGgGGCUC-UCc -3'
miRNA:   3'- -GCUG-------CCUGCAGG----------CGCGCgUCGAGuAG- -5'
9067 5' -58.6 NC_002512.2 + 13362 0.66 0.902724
Target:  5'- aCGAcuCGGgcGCGUUCGUGgugcCGCGGUUCGUCc -3'
miRNA:   3'- -GCU--GCC--UGCAGGCGC----GCGUCGAGUAG- -5'
9067 5' -58.6 NC_002512.2 + 83195 0.66 0.890305
Target:  5'- cCGuCGccCGUCCGCGCGCggGGCggggggagCGUCg -3'
miRNA:   3'- -GCuGCcuGCAGGCGCGCG--UCGa-------GUAG- -5'
9067 5' -58.6 NC_002512.2 + 101832 0.66 0.889663
Target:  5'- aCGAC-GACG-CCGCgaccgucggggccGUGCAGCUCuUCg -3'
miRNA:   3'- -GCUGcCUGCaGGCG-------------CGCGUCGAGuAG- -5'
9067 5' -58.6 NC_002512.2 + 59258 0.66 0.906872
Target:  5'- cCGGCGGAagcgaugucgcccaCGUCCGUGaCGUcguGCUCGa- -3'
miRNA:   3'- -GCUGCCU--------------GCAGGCGC-GCGu--CGAGUag -5'
9067 5' -58.6 NC_002512.2 + 128805 0.66 0.883786
Target:  5'- cCGGC-GugGUCCGCGgGCGGgccCUCGa- -3'
miRNA:   3'- -GCUGcCugCAGGCGCgCGUC---GAGUag -5'
9067 5' -58.6 NC_002512.2 + 8720 0.66 0.896619
Target:  5'- aGGuCGGuCGgCCGCGCGCGcccGCcCGUCg -3'
miRNA:   3'- gCU-GCCuGCaGGCGCGCGU---CGaGUAG- -5'
9067 5' -58.6 NC_002512.2 + 153639 0.66 0.890305
Target:  5'- uCGGCGGACGggagCGgGgGCAcGCUCcUCa -3'
miRNA:   3'- -GCUGCCUGCag--GCgCgCGU-CGAGuAG- -5'
9067 5' -58.6 NC_002512.2 + 222474 0.66 0.895997
Target:  5'- aCGAUGGAC-UCCGUGUugccauuGCAGUcgacgcgaUCGUCg -3'
miRNA:   3'- -GCUGCCUGcAGGCGCG-------CGUCG--------AGUAG- -5'
9067 5' -58.6 NC_002512.2 + 133861 0.66 0.883786
Target:  5'- cCGA-GGACGUCCuGgG-GCGGCUCGa- -3'
miRNA:   3'- -GCUgCCUGCAGG-CgCgCGUCGAGUag -5'
9067 5' -58.6 NC_002512.2 + 134332 0.66 0.890305
Target:  5'- cCGACGGACucgCCGCG-GCcgAGCUCc-- -3'
miRNA:   3'- -GCUGCCUGca-GGCGCgCG--UCGAGuag -5'
9067 5' -58.6 NC_002512.2 + 108331 0.66 0.890305
Target:  5'- gCGGCGGGCGgUCG-GCGCGGCa---- -3'
miRNA:   3'- -GCUGCCUGCaGGCgCGCGUCGaguag -5'
9067 5' -58.6 NC_002512.2 + 226529 0.66 0.896619
Target:  5'- gGGCGGACgGUCUGaGCGgGGgUCAUa -3'
miRNA:   3'- gCUGCCUG-CAGGCgCGCgUCgAGUAg -5'
9067 5' -58.6 NC_002512.2 + 147751 0.66 0.877065
Target:  5'- gGAcCGaGACGUgCGCcaGCGCGGC-CGUCc -3'
miRNA:   3'- gCU-GC-CUGCAgGCG--CGCGUCGaGUAG- -5'
9067 5' -58.6 NC_002512.2 + 102693 0.66 0.883786
Target:  5'- cCGucuCGGGCGUCgGCGaCGCAGUg---- -3'
miRNA:   3'- -GCu--GCCUGCAGgCGC-GCGUCGaguag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.