miRNA display CGI


Results 1 - 20 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9067 5' -58.6 NC_002512.2 + 2098 0.66 0.908618
Target:  5'- -aGCGGGCGguaCgGC-CGCGGCUCgGUCg -3'
miRNA:   3'- gcUGCCUGCa--GgCGcGCGUCGAG-UAG- -5'
9067 5' -58.6 NC_002512.2 + 8147 0.67 0.863034
Target:  5'- uCGACGGcGCGUCCGCcagGC-GCUCGg- -3'
miRNA:   3'- -GCUGCC-UGCAGGCGcg-CGuCGAGUag -5'
9067 5' -58.6 NC_002512.2 + 8720 0.66 0.896619
Target:  5'- aGGuCGGuCGgCCGCGCGCGcccGCcCGUCg -3'
miRNA:   3'- gCU-GCCuGCaGGCGCGCGU---CGaGUAG- -5'
9067 5' -58.6 NC_002512.2 + 9345 0.69 0.755669
Target:  5'- aCGGCGGugACGcccUCGCGCaGCAGCUCcUCc -3'
miRNA:   3'- -GCUGCC--UGCa--GGCGCG-CGUCGAGuAG- -5'
9067 5' -58.6 NC_002512.2 + 9478 0.68 0.79984
Target:  5'- aGGCGGGCGggcCCGCGaGCGGCggGUa -3'
miRNA:   3'- gCUGCCUGCa--GGCGCgCGUCGagUAg -5'
9067 5' -58.6 NC_002512.2 + 9753 0.67 0.840589
Target:  5'- gCGGCGGAgccggacccgcCGccCCGCGUGgCGGCUCAc- -3'
miRNA:   3'- -GCUGCCU-----------GCa-GGCGCGC-GUCGAGUag -5'
9067 5' -58.6 NC_002512.2 + 11094 0.69 0.773688
Target:  5'- aCGGCGGuguCGUCCGC-CuCGGcCUCGUCc -3'
miRNA:   3'- -GCUGCCu--GCAGGCGcGcGUC-GAGUAG- -5'
9067 5' -58.6 NC_002512.2 + 13362 0.66 0.902724
Target:  5'- aCGAcuCGGgcGCGUUCGUGgugcCGCGGUUCGUCc -3'
miRNA:   3'- -GCU--GCC--UGCAGGCGC----GCGUCGAGUAG- -5'
9067 5' -58.6 NC_002512.2 + 17046 0.68 0.824758
Target:  5'- gGACGGACGgcgcCCGCGCccaaccccgGCGGCgCGg- -3'
miRNA:   3'- gCUGCCUGCa---GGCGCG---------CGUCGaGUag -5'
9067 5' -58.6 NC_002512.2 + 17823 0.69 0.76383
Target:  5'- gCGGCGGAUGcCCaggguguGCGCcaGCAGCUCcUCc -3'
miRNA:   3'- -GCUGCCUGCaGG-------CGCG--CGUCGAGuAG- -5'
9067 5' -58.6 NC_002512.2 + 20297 0.67 0.869444
Target:  5'- gGACGuGGCGgugaCCGUGCcggacgaGgAGCUCGUCg -3'
miRNA:   3'- gCUGC-CUGCa---GGCGCG-------CgUCGAGUAG- -5'
9067 5' -58.6 NC_002512.2 + 20459 0.69 0.755669
Target:  5'- uGACGGuCaUCCGCGCGguGUgCAUg -3'
miRNA:   3'- gCUGCCuGcAGGCGCGCguCGaGUAg -5'
9067 5' -58.6 NC_002512.2 + 23422 0.67 0.840589
Target:  5'- uGAUcgGGACGcuggCCGUGCGCAGCg---- -3'
miRNA:   3'- gCUG--CCUGCa---GGCGCGCGUCGaguag -5'
9067 5' -58.6 NC_002512.2 + 28089 0.67 0.862313
Target:  5'- aCGGCGGAgaggucgccgcccCGUCCGCGCuCucaccCUCGUCc -3'
miRNA:   3'- -GCUGCCU-------------GCAGGCGCGcGuc---GAGUAG- -5'
9067 5' -58.6 NC_002512.2 + 28579 0.66 0.883786
Target:  5'- aGACGGAgcUGaUCCGaGCGguGCgCGUCa -3'
miRNA:   3'- gCUGCCU--GC-AGGCgCGCguCGaGUAG- -5'
9067 5' -58.6 NC_002512.2 + 29592 0.67 0.870146
Target:  5'- gGGCGGACGagccCCaGUcCGaCGGCUCGUCg -3'
miRNA:   3'- gCUGCCUGCa---GG-CGcGC-GUCGAGUAG- -5'
9067 5' -58.6 NC_002512.2 + 30410 0.68 0.79984
Target:  5'- uGACGGACGgggaCGCGgGCG--UCGUCg -3'
miRNA:   3'- gCUGCCUGCag--GCGCgCGUcgAGUAG- -5'
9067 5' -58.6 NC_002512.2 + 33047 0.71 0.660915
Target:  5'- aGACGG-CGUCCaucCGcCGCAGCcCGUCg -3'
miRNA:   3'- gCUGCCuGCAGGc--GC-GCGUCGaGUAG- -5'
9067 5' -58.6 NC_002512.2 + 35815 0.67 0.832756
Target:  5'- -cGCGGACaGUCUGC-UGCAGCUUuUCg -3'
miRNA:   3'- gcUGCCUG-CAGGCGcGCGUCGAGuAG- -5'
9067 5' -58.6 NC_002512.2 + 38289 0.71 0.660915
Target:  5'- cCGACGGACucgaCCGCGCGaccgaacaGGCUC-UCg -3'
miRNA:   3'- -GCUGCCUGca--GGCGCGCg-------UCGAGuAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.