miRNA display CGI


Results 1 - 20 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9067 5' -58.6 NC_002512.2 + 124379 0.7 0.718508
Target:  5'- -cACGG-CGUCCuGCGCGagaGGCUgGUCg -3'
miRNA:   3'- gcUGCCuGCAGG-CGCGCg--UCGAgUAG- -5'
9067 5' -58.6 NC_002512.2 + 106751 0.71 0.641469
Target:  5'- cCGGCGG-CGcUCCGCGUcCGGCUC-UCg -3'
miRNA:   3'- -GCUGCCuGC-AGGCGCGcGUCGAGuAG- -5'
9067 5' -58.6 NC_002512.2 + 127579 0.71 0.651198
Target:  5'- cCGACGGAcCGUCCGCGaCGUcgcccuGGCg-GUCg -3'
miRNA:   3'- -GCUGCCU-GCAGGCGC-GCG------UCGagUAG- -5'
9067 5' -58.6 NC_002512.2 + 33047 0.71 0.660915
Target:  5'- aGACGG-CGUCCaucCGcCGCAGCcCGUCg -3'
miRNA:   3'- gCUGCCuGCAGGc--GC-GCGUCGaGUAG- -5'
9067 5' -58.6 NC_002512.2 + 38289 0.71 0.660915
Target:  5'- cCGACGGACucgaCCGCGCGaccgaacaGGCUC-UCg -3'
miRNA:   3'- -GCUGCCUGca--GGCGCGCg-------UCGAGuAG- -5'
9067 5' -58.6 NC_002512.2 + 95244 0.71 0.660915
Target:  5'- cCGGaggGGGCGUCCGgagggcCGCGCGGCUCc-- -3'
miRNA:   3'- -GCUg--CCUGCAGGC------GCGCGUCGAGuag -5'
9067 5' -58.6 NC_002512.2 + 97625 0.7 0.67061
Target:  5'- gCGGCGGACcuaCCGCcugaCGCAGCUCGa- -3'
miRNA:   3'- -GCUGCCUGca-GGCGc---GCGUCGAGUag -5'
9067 5' -58.6 NC_002512.2 + 129340 0.7 0.680277
Target:  5'- -cACGGACcUCUGCGCccuggGCAGCgUCGUCg -3'
miRNA:   3'- gcUGCCUGcAGGCGCG-----CGUCG-AGUAG- -5'
9067 5' -58.6 NC_002512.2 + 62334 0.7 0.699495
Target:  5'- cCGACGGGCaccCCcugGCgGCGCAGCUCuUCg -3'
miRNA:   3'- -GCUGCCUGca-GG---CG-CGCGUCGAGuAG- -5'
9067 5' -58.6 NC_002512.2 + 141842 0.71 0.641469
Target:  5'- gGGCGGGCGUgaGCGCGUgucaccguguuAGgUCAUCu -3'
miRNA:   3'- gCUGCCUGCAggCGCGCG-----------UCgAGUAG- -5'
9067 5' -58.6 NC_002512.2 + 114959 0.71 0.631733
Target:  5'- uGACc-GCGUCCGCGUucaGCAGCUUGUCc -3'
miRNA:   3'- gCUGccUGCAGGCGCG---CGUCGAGUAG- -5'
9067 5' -58.6 NC_002512.2 + 120683 0.71 0.621996
Target:  5'- aCGcACGGACGagcCCGCGgGCGGUuucgCAUCg -3'
miRNA:   3'- -GC-UGCCUGCa--GGCGCgCGUCGa---GUAG- -5'
9067 5' -58.6 NC_002512.2 + 110009 0.76 0.370235
Target:  5'- uGugGGGCGUCaCGCGCacacccguguccaGCAGCUuCGUCu -3'
miRNA:   3'- gCugCCUGCAG-GCGCG-------------CGUCGA-GUAG- -5'
9067 5' -58.6 NC_002512.2 + 101117 0.75 0.410948
Target:  5'- gCGGCGcGGCGUgCGCucGCGCAGCgCGUCg -3'
miRNA:   3'- -GCUGC-CUGCAgGCG--CGCGUCGaGUAG- -5'
9067 5' -58.6 NC_002512.2 + 98586 0.74 0.45345
Target:  5'- gCGGCGGGuCGUCCGCGCuGCacguccAGC-CGUCg -3'
miRNA:   3'- -GCUGCCU-GCAGGCGCG-CG------UCGaGUAG- -5'
9067 5' -58.6 NC_002512.2 + 82390 0.74 0.462235
Target:  5'- cCGGCGGugGcUCCGCGCGCGGg----- -3'
miRNA:   3'- -GCUGCCugC-AGGCGCGCGUCgaguag -5'
9067 5' -58.6 NC_002512.2 + 38937 0.73 0.507427
Target:  5'- gCGGCGGGCGcCCGCGUGCgcccgggucuGGUUCcgCu -3'
miRNA:   3'- -GCUGCCUGCaGGCGCGCG----------UCGAGuaG- -5'
9067 5' -58.6 NC_002512.2 + 83973 0.72 0.583186
Target:  5'- gCGGCGGAUGcCCGgcgcggggcgguCGCGCAGCUUcagGUCc -3'
miRNA:   3'- -GCUGCCUGCaGGC------------GCGCGUCGAG---UAG- -5'
9067 5' -58.6 NC_002512.2 + 153290 0.72 0.612267
Target:  5'- gGACaGACGUCCGaCGC-CGGCguUCAUCu -3'
miRNA:   3'- gCUGcCUGCAGGC-GCGcGUCG--AGUAG- -5'
9067 5' -58.6 NC_002512.2 + 82696 0.71 0.621996
Target:  5'- uGuCGG-CGUCCGUGCGCGGCgCGg- -3'
miRNA:   3'- gCuGCCuGCAGGCGCGCGUCGaGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.