miRNA display CGI


Results 1 - 20 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9067 5' -58.6 NC_002512.2 + 138220 1.1 0.002452
Target:  5'- cCGACGGACGUCCGCGCGCAGCUCAUCa -3'
miRNA:   3'- -GCUGCCUGCAGGCGCGCGUCGAGUAG- -5'
9067 5' -58.6 NC_002512.2 + 169026 0.84 0.125083
Target:  5'- gGGCGGGCGUCCGCGaGCGGCgccggCAUCu -3'
miRNA:   3'- gCUGCCUGCAGGCGCgCGUCGa----GUAG- -5'
9067 5' -58.6 NC_002512.2 + 223278 0.81 0.207821
Target:  5'- gGGCgGGACG-CCGCGCGCAGCUaCAUg -3'
miRNA:   3'- gCUG-CCUGCaGGCGCGCGUCGA-GUAg -5'
9067 5' -58.6 NC_002512.2 + 104790 0.79 0.273899
Target:  5'- uGGCGGG-GUCCGCGCGCGGCggGUUg -3'
miRNA:   3'- gCUGCCUgCAGGCGCGCGUCGagUAG- -5'
9067 5' -58.6 NC_002512.2 + 221159 0.77 0.326692
Target:  5'- uCGACGGGCGggCGCGCGCGGC-CGa- -3'
miRNA:   3'- -GCUGCCUGCagGCGCGCGUCGaGUag -5'
9067 5' -58.6 NC_002512.2 + 110009 0.76 0.370235
Target:  5'- uGugGGGCGUCaCGCGCacacccguguccaGCAGCUuCGUCu -3'
miRNA:   3'- gCugCCUGCAG-GCGCG-------------CGUCGA-GUAG- -5'
9067 5' -58.6 NC_002512.2 + 176150 0.76 0.394652
Target:  5'- -cGCGGACGU-CGCGCaGCAGCUCGa- -3'
miRNA:   3'- gcUGCCUGCAgGCGCG-CGUCGAGUag -5'
9067 5' -58.6 NC_002512.2 + 101117 0.75 0.410948
Target:  5'- gCGGCGcGGCGUgCGCucGCGCAGCgCGUCg -3'
miRNA:   3'- -GCUGC-CUGCAgGCG--CGCGUCGaGUAG- -5'
9067 5' -58.6 NC_002512.2 + 174333 0.75 0.427654
Target:  5'- aGGCGGGgGUCCGcCGCGCc-CUCGUCc -3'
miRNA:   3'- gCUGCCUgCAGGC-GCGCGucGAGUAG- -5'
9067 5' -58.6 NC_002512.2 + 98586 0.74 0.45345
Target:  5'- gCGGCGGGuCGUCCGCGCuGCacguccAGC-CGUCg -3'
miRNA:   3'- -GCUGCCU-GCAGGCGCG-CG------UCGaGUAG- -5'
9067 5' -58.6 NC_002512.2 + 82390 0.74 0.462235
Target:  5'- cCGGCGGugGcUCCGCGCGCGGg----- -3'
miRNA:   3'- -GCUGCCugC-AGGCGCGCGUCgaguag -5'
9067 5' -58.6 NC_002512.2 + 189602 0.74 0.48911
Target:  5'- gGAC-GACGUUCGUGCGCGGCggccgcacgcgaUCGUCg -3'
miRNA:   3'- gCUGcCUGCAGGCGCGCGUCG------------AGUAG- -5'
9067 5' -58.6 NC_002512.2 + 38937 0.73 0.507427
Target:  5'- gCGGCGGGCGcCCGCGUGCgcccgggucuGGUUCcgCu -3'
miRNA:   3'- -GCUGCCUGCaGGCGCGCG----------UCGAGuaG- -5'
9067 5' -58.6 NC_002512.2 + 184963 0.73 0.526028
Target:  5'- aGcAUGGagcGCGUCCGcCGCGCGGC-CGUCg -3'
miRNA:   3'- gC-UGCC---UGCAGGC-GCGCGUCGaGUAG- -5'
9067 5' -58.6 NC_002512.2 + 133081 0.73 0.526028
Target:  5'- aGGCGGugGgUCCgguugGCGCGCAGCgacucccCGUCg -3'
miRNA:   3'- gCUGCCugC-AGG-----CGCGCGUCGa------GUAG- -5'
9067 5' -58.6 NC_002512.2 + 106677 0.73 0.55439
Target:  5'- gGGCGGcgACGUCCuCGgGCAGCUCcUCc -3'
miRNA:   3'- gCUGCC--UGCAGGcGCgCGUCGAGuAG- -5'
9067 5' -58.6 NC_002512.2 + 83973 0.72 0.583186
Target:  5'- gCGGCGGAUGcCCGgcgcggggcgguCGCGCAGCUUcagGUCc -3'
miRNA:   3'- -GCUGCCUGCaGGC------------GCGCGUCGAG---UAG- -5'
9067 5' -58.6 NC_002512.2 + 124285 0.72 0.602551
Target:  5'- gGAccCGGGCGUgcggcucgaCCGCGCGgAGCUgAUCg -3'
miRNA:   3'- gCU--GCCUGCA---------GGCGCGCgUCGAgUAG- -5'
9067 5' -58.6 NC_002512.2 + 207394 0.72 0.602551
Target:  5'- uGAUGGACGgCUGCuGCGC-GCUCAUg -3'
miRNA:   3'- gCUGCCUGCaGGCG-CGCGuCGAGUAg -5'
9067 5' -58.6 NC_002512.2 + 153290 0.72 0.612267
Target:  5'- gGACaGACGUCCGaCGC-CGGCguUCAUCu -3'
miRNA:   3'- gCUGcCUGCAGGC-GCGcGUCG--AGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.