Results 21 - 40 of 280 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9069 | 3' | -52.4 | NC_002512.2 | + | 13080 | 0.66 | 0.992985 |
Target: 5'- cGAcCCGCgACGCC-AUCguCAACGACGc -3' miRNA: 3'- -CUuGGCG-UGCGGcUAGauGUUGCUGC- -5' |
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9069 | 3' | -52.4 | NC_002512.2 | + | 23430 | 0.66 | 0.995424 |
Target: 5'- ---aCGCugGCCGugc-GCAGCGACu -3' miRNA: 3'- cuugGCGugCGGCuagaUGUUGCUGc -5' |
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9069 | 3' | -52.4 | NC_002512.2 | + | 44403 | 0.66 | 0.996627 |
Target: 5'- ---gCGUGCGCCauGAcCUGCGGCGGCa -3' miRNA: 3'- cuugGCGUGCGG--CUaGAUGUUGCUGc -5' |
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9069 | 3' | -52.4 | NC_002512.2 | + | 128123 | 0.66 | 0.996063 |
Target: 5'- -cGCCGUcuCGCCGAaggUCagGCGGCGGCu -3' miRNA: 3'- cuUGGCGu-GCGGCU---AGa-UGUUGCUGc -5' |
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9069 | 3' | -52.4 | NC_002512.2 | + | 95296 | 0.66 | 0.996627 |
Target: 5'- --cCCGUcggcggacgagGCGCCGAa--GCAGCGGCGg -3' miRNA: 3'- cuuGGCG-----------UGCGGCUagaUGUUGCUGC- -5' |
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9069 | 3' | -52.4 | NC_002512.2 | + | 52917 | 0.66 | 0.996063 |
Target: 5'- aAGgCGUACGUCGGaCUGCGggACGACa -3' miRNA: 3'- cUUgGCGUGCGGCUaGAUGU--UGCUGc -5' |
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9069 | 3' | -52.4 | NC_002512.2 | + | 203763 | 0.66 | 0.995424 |
Target: 5'- aAAUgGCACG-CGA-CUugAACGACGa -3' miRNA: 3'- cUUGgCGUGCgGCUaGAugUUGCUGC- -5' |
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9069 | 3' | -52.4 | NC_002512.2 | + | 117003 | 0.66 | 0.995817 |
Target: 5'- cGGCCGCACGCagggcgggcgcaaGAUCauCGGCGGCc -3' miRNA: 3'- cUUGGCGUGCGg------------CUAGauGUUGCUGc -5' |
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9069 | 3' | -52.4 | NC_002512.2 | + | 59331 | 0.66 | 0.996002 |
Target: 5'- aGAACUGCgaccuggACGCgGAgCUGCAGCGGa- -3' miRNA: 3'- -CUUGGCG-------UGCGgCUaGAUGUUGCUgc -5' |
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9069 | 3' | -52.4 | NC_002512.2 | + | 10217 | 0.66 | 0.995424 |
Target: 5'- cGGGCgGCGCGCCcaGAUCc-CGACgGGCGa -3' miRNA: 3'- -CUUGgCGUGCGG--CUAGauGUUG-CUGC- -5' |
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9069 | 3' | -52.4 | NC_002512.2 | + | 5163 | 0.66 | 0.996627 |
Target: 5'- cAGCgGCGCGaCCGGg--GCGGCGGCc -3' miRNA: 3'- cUUGgCGUGC-GGCUagaUGUUGCUGc -5' |
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9069 | 3' | -52.4 | NC_002512.2 | + | 140898 | 0.66 | 0.995424 |
Target: 5'- --cCCGCGCuCCGGgu--CGACGACGg -3' miRNA: 3'- cuuGGCGUGcGGCUagauGUUGCUGC- -5' |
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9069 | 3' | -52.4 | NC_002512.2 | + | 45423 | 0.66 | 0.992985 |
Target: 5'- cGACgGCgGCGCCGG-CcGCGGCGACu -3' miRNA: 3'- cUUGgCG-UGCGGCUaGaUGUUGCUGc -5' |
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9069 | 3' | -52.4 | NC_002512.2 | + | 3438 | 0.66 | 0.996063 |
Target: 5'- --cUCGCgGgGCUGGUCggugACGGCGACGa -3' miRNA: 3'- cuuGGCG-UgCGGCUAGa---UGUUGCUGC- -5' |
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9069 | 3' | -52.4 | NC_002512.2 | + | 54621 | 0.66 | 0.995424 |
Target: 5'- cGGCCGCcagcuaccCGCCGAgcgCggcccugGCGACGAUGg -3' miRNA: 3'- cUUGGCGu-------GCGGCUa--Ga------UGUUGCUGC- -5' |
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9069 | 3' | -52.4 | NC_002512.2 | + | 123454 | 0.66 | 0.995424 |
Target: 5'- cGACCGCugGUUcgGGUCggACAACG-CGg -3' miRNA: 3'- cUUGGCGugCGG--CUAGa-UGUUGCuGC- -5' |
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9069 | 3' | -52.4 | NC_002512.2 | + | 16958 | 0.66 | 0.996063 |
Target: 5'- cGGACCGgGCGcCCGAUCgaaGAUGcCGu -3' miRNA: 3'- -CUUGGCgUGC-GGCUAGaugUUGCuGC- -5' |
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9069 | 3' | -52.4 | NC_002512.2 | + | 97138 | 0.66 | 0.992985 |
Target: 5'- --cCCGCcugcgggacgACGCCGcgCUGCGccuGCGGCa -3' miRNA: 3'- cuuGGCG----------UGCGGCuaGAUGU---UGCUGc -5' |
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9069 | 3' | -52.4 | NC_002512.2 | + | 118714 | 0.66 | 0.996063 |
Target: 5'- --cCCGCcUGCCGcUCgcCGGCGACGu -3' miRNA: 3'- cuuGGCGuGCGGCuAGauGUUGCUGC- -5' |
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9069 | 3' | -52.4 | NC_002512.2 | + | 110810 | 0.66 | 0.995424 |
Target: 5'- --cUCGCGCGaCCGGUCgagggACAGCaGCGc -3' miRNA: 3'- cuuGGCGUGC-GGCUAGa----UGUUGcUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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