miRNA display CGI


Results 21 - 40 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9069 3' -52.4 NC_002512.2 + 118461 0.75 0.789891
Target:  5'- -uACUGCGCGCaGAUCUACAucgaguACGGCGc -3'
miRNA:   3'- cuUGGCGUGCGgCUAGAUGU------UGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 141289 0.74 0.807655
Target:  5'- cGGCCGCGCGCaCGG-CggcaccgGCGGCGACGa -3'
miRNA:   3'- cUUGGCGUGCG-GCUaGa------UGUUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 154304 0.74 0.807655
Target:  5'- aAGCCGcCACGUCGAcCgcgACGGCGGCGg -3'
miRNA:   3'- cUUGGC-GUGCGGCUaGa--UGUUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 99685 0.74 0.807655
Target:  5'- aGGACCaCugGCCGAUCaUGCGACGGg- -3'
miRNA:   3'- -CUUGGcGugCGGCUAG-AUGUUGCUgc -5'
9069 3' -52.4 NC_002512.2 + 96699 0.74 0.816308
Target:  5'- -cGCCGCGUGCCGGaCUGCGugGugGu -3'
miRNA:   3'- cuUGGCGUGCGGCUaGAUGUugCugC- -5'
9069 3' -52.4 NC_002512.2 + 97176 0.74 0.817164
Target:  5'- cGGGCCGaggaucucgcccacgACGCCcGUCUGCGGCGGCGg -3'
miRNA:   3'- -CUUGGCg--------------UGCGGcUAGAUGUUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 93088 0.74 0.819723
Target:  5'- aGAGCCGCGCGUCGuuccugggcuUCUGCcuguucuucgugcugGACGGCGa -3'
miRNA:   3'- -CUUGGCGUGCGGCu---------AGAUG---------------UUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 217294 0.74 0.833113
Target:  5'- cGGACCGCGCGCCGGgagAUGAuCGGCu -3'
miRNA:   3'- -CUUGGCGUGCGGCUagaUGUU-GCUGc -5'
9069 3' -52.4 NC_002512.2 + 131998 0.73 0.840445
Target:  5'- uGGGCCGCcccggGCGCCGGggggaccUCgGCGGCGACGu -3'
miRNA:   3'- -CUUGGCG-----UGCGGCU-------AGaUGUUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 224794 0.73 0.84125
Target:  5'- --cCCGCccGCGCCGAcgCcgGCGACGACGa -3'
miRNA:   3'- cuuGGCG--UGCGGCUa-Ga-UGUUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 217111 0.73 0.84125
Target:  5'- gGGGgCGC-CGCCGAgucCUGCGGCGGCa -3'
miRNA:   3'- -CUUgGCGuGCGGCUa--GAUGUUGCUGc -5'
9069 3' -52.4 NC_002512.2 + 59240 0.73 0.849202
Target:  5'- aAACCGCAgGCCGAg--GCGcCGGCGg -3'
miRNA:   3'- cUUGGCGUgCGGCUagaUGUuGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 138511 0.73 0.85696
Target:  5'- aAGCUGCugGUgGAUCcgACGACGugGg -3'
miRNA:   3'- cUUGGCGugCGgCUAGa-UGUUGCugC- -5'
9069 3' -52.4 NC_002512.2 + 95872 0.73 0.871874
Target:  5'- aGGGCCGCGCGCCGAggaUCU-CGAgGuCGc -3'
miRNA:   3'- -CUUGGCGUGCGGCU---AGAuGUUgCuGC- -5'
9069 3' -52.4 NC_002512.2 + 137996 0.73 0.871874
Target:  5'- cGGGCCGUGCGCCGcgCcGCcgcccgcgccgGACGGCGg -3'
miRNA:   3'- -CUUGGCGUGCGGCuaGaUG-----------UUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 83353 0.72 0.879017
Target:  5'- --uCCGCAUGCuCGGUCgGCGAUGugGa -3'
miRNA:   3'- cuuGGCGUGCG-GCUAGaUGUUGCugC- -5'
9069 3' -52.4 NC_002512.2 + 149839 0.72 0.879017
Target:  5'- cGAcCCGCGCGaCGAgg-ACGACGACGa -3'
miRNA:   3'- -CUuGGCGUGCgGCUagaUGUUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 111983 0.72 0.879017
Target:  5'- uGGCgCGCugGCCGuggaGCAGCGACGg -3'
miRNA:   3'- cUUG-GCGugCGGCuagaUGUUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 126201 0.72 0.879017
Target:  5'- -cGCCGCGucCGCCGcccUCUGCGACGuCGa -3'
miRNA:   3'- cuUGGCGU--GCGGCu--AGAUGUUGCuGC- -5'
9069 3' -52.4 NC_002512.2 + 165303 0.72 0.885945
Target:  5'- -cGCCGCGCGCCGcUCgucGCuguGCGGCu -3'
miRNA:   3'- cuUGGCGUGCGGCuAGa--UGu--UGCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.