miRNA display CGI


Results 1 - 20 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9069 3' -52.4 NC_002512.2 + 137114 1.08 0.011531
Target:  5'- uGAACCGCACGCCGAUCUACAACGACGu -3'
miRNA:   3'- -CUUGGCGUGCGGCUAGAUGUUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 83742 0.82 0.396164
Target:  5'- cGAuCCGCAUGCCGAUCUucCGGCGGCa -3'
miRNA:   3'- -CUuGGCGUGCGGCUAGAu-GUUGCUGc -5'
9069 3' -52.4 NC_002512.2 + 209484 0.8 0.504405
Target:  5'- cGGCUGCucguCGCCG-UCUACAGCGGCGg -3'
miRNA:   3'- cUUGGCGu---GCGGCuAGAUGUUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 122299 0.79 0.553191
Target:  5'- cGAGCCGCACGUCGAcgagaUCaACAugGugGg -3'
miRNA:   3'- -CUUGGCGUGCGGCU-----AGaUGUugCugC- -5'
9069 3' -52.4 NC_002512.2 + 122401 0.79 0.563129
Target:  5'- -cGCUGCGgGCCGGUC-GCGGCGACGa -3'
miRNA:   3'- cuUGGCGUgCGGCUAGaUGUUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 71018 0.78 0.593202
Target:  5'- gGGGCCGcCGCcgGCCGGUCgACGACGACGu -3'
miRNA:   3'- -CUUGGC-GUG--CGGCUAGaUGUUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 39686 0.78 0.593202
Target:  5'- cGACCGCGcCGCCGAccuUCUGCAGCcggGGCGa -3'
miRNA:   3'- cUUGGCGU-GCGGCU---AGAUGUUG---CUGC- -5'
9069 3' -52.4 NC_002512.2 + 49341 0.78 0.633653
Target:  5'- -cGCCGCaaGCGCCGAUCgACGACGAa- -3'
miRNA:   3'- cuUGGCG--UGCGGCUAGaUGUUGCUgc -5'
9069 3' -52.4 NC_002512.2 + 164475 0.77 0.643781
Target:  5'- cGACCGCcCGCCGAgCUACGAgGACu -3'
miRNA:   3'- cUUGGCGuGCGGCUaGAUGUUgCUGc -5'
9069 3' -52.4 NC_002512.2 + 121780 0.77 0.643781
Target:  5'- cGGACCGCcgaggcggggACGCCGAag-ACGACGACGa -3'
miRNA:   3'- -CUUGGCG----------UGCGGCUagaUGUUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 12064 0.77 0.653901
Target:  5'- cGAACCGCcCGCCgucgacGAUCgggACGGCGACGc -3'
miRNA:   3'- -CUUGGCGuGCGG------CUAGa--UGUUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 15120 0.77 0.664004
Target:  5'- cGACCG-GCGCCGGaCUGCGACGGCa -3'
miRNA:   3'- cUUGGCgUGCGGCUaGAUGUUGCUGc -5'
9069 3' -52.4 NC_002512.2 + 81810 0.77 0.664004
Target:  5'- aGGGCCGaCGCGCCGcgagGUCUccgagaggACGACGACGa -3'
miRNA:   3'- -CUUGGC-GUGCGGC----UAGA--------UGUUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 188636 0.77 0.684125
Target:  5'- cGGGCCGCaaggGCGCCGGcg-GCGGCGGCGg -3'
miRNA:   3'- -CUUGGCG----UGCGGCUagaUGUUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 28244 0.76 0.723793
Target:  5'- gGGGCCGuCGCGCCGcGagUACGACGGCGc -3'
miRNA:   3'- -CUUGGC-GUGCGGC-UagAUGUUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 101662 0.76 0.732568
Target:  5'- cGGCCGCggacgccGgGCCGAUCUACGuCGGCGg -3'
miRNA:   3'- cUUGGCG-------UgCGGCUAGAUGUuGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 124303 0.75 0.752763
Target:  5'- cGACCGCGCggaGCUGAUCgggGCcGCGGCGg -3'
miRNA:   3'- cUUGGCGUG---CGGCUAGa--UGuUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 47757 0.75 0.762224
Target:  5'- gGAGCUGCACGCCuucaacGAcuUCUGC-GCGACGa -3'
miRNA:   3'- -CUUGGCGUGCGG------CU--AGAUGuUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 95489 0.75 0.789891
Target:  5'- gGAACCGC-CGCCGcAUCcAC-ACGACGu -3'
miRNA:   3'- -CUUGGCGuGCGGC-UAGaUGuUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 118461 0.75 0.789891
Target:  5'- -uACUGCGCGCaGAUCUACAucgaguACGGCGc -3'
miRNA:   3'- cuUGGCGUGCGgCUAGAUGU------UGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.