miRNA display CGI


Results 1 - 20 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9069 3' -52.4 NC_002512.2 + 115865 0.66 0.992985
Target:  5'- -cACCGCGC-CCGGUgccgCUGCGGggcCGACGg -3'
miRNA:   3'- cuUGGCGUGcGGCUA----GAUGUU---GCUGC- -5'
9069 3' -52.4 NC_002512.2 + 10217 0.66 0.995424
Target:  5'- cGGGCgGCGCGCCcaGAUCc-CGACgGGCGa -3'
miRNA:   3'- -CUUGgCGUGCGG--CUAGauGUUG-CUGC- -5'
9069 3' -52.4 NC_002512.2 + 110810 0.66 0.995424
Target:  5'- --cUCGCGCGaCCGGUCgagggACAGCaGCGc -3'
miRNA:   3'- cuuGGCGUGC-GGCUAGa----UGUUGcUGC- -5'
9069 3' -52.4 NC_002512.2 + 135250 0.66 0.993893
Target:  5'- aGGCCGUcguccGCGCCGcgCU-CGACGAgGc -3'
miRNA:   3'- cUUGGCG-----UGCGGCuaGAuGUUGCUgC- -5'
9069 3' -52.4 NC_002512.2 + 97138 0.66 0.992985
Target:  5'- --cCCGCcugcgggacgACGCCGcgCUGCGccuGCGGCa -3'
miRNA:   3'- cuuGGCG----------UGCGGCuaGAUGU---UGCUGc -5'
9069 3' -52.4 NC_002512.2 + 155167 0.66 0.994703
Target:  5'- uAACCGCaccgaguucGCGCCGAagcccgUCUGCGAgaucCGACc -3'
miRNA:   3'- cUUGGCG---------UGCGGCU------AGAUGUU----GCUGc -5'
9069 3' -52.4 NC_002512.2 + 23233 0.66 0.993806
Target:  5'- --uCCGCACGgCGAUCggcgaACAcgggcagaugaucACGACGu -3'
miRNA:   3'- cuuGGCGUGCgGCUAGa----UGU-------------UGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 100667 0.66 0.994703
Target:  5'- cGAUCGCGCGuUCGuUCUccgcggccaGCGGCGGCGg -3'
miRNA:   3'- cUUGGCGUGC-GGCuAGA---------UGUUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 110518 0.66 0.995356
Target:  5'- cGGCCGCGCGCCGcgagcgaGUCgcCGugacCGGCGu -3'
miRNA:   3'- cUUGGCGUGCGGC-------UAGauGUu---GCUGC- -5'
9069 3' -52.4 NC_002512.2 + 94022 0.66 0.993806
Target:  5'- uGAcCCGgACGCUcgguuucgcggcgGAUCUcuucgGCGACGACGg -3'
miRNA:   3'- -CUuGGCgUGCGG-------------CUAGA-----UGUUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 141064 0.66 0.994703
Target:  5'- uGGugUGCGgGuCCGAcaUCUACAcCGACGc -3'
miRNA:   3'- -CUugGCGUgC-GGCU--AGAUGUuGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 109078 0.66 0.993893
Target:  5'- --cCCGCGCGCCaGGUCcgucgACAcCGugGc -3'
miRNA:   3'- cuuGGCGUGCGG-CUAGa----UGUuGCugC- -5'
9069 3' -52.4 NC_002512.2 + 54621 0.66 0.995424
Target:  5'- cGGCCGCcagcuaccCGCCGAgcgCggcccugGCGACGAUGg -3'
miRNA:   3'- cUUGGCGu-------GCGGCUa--Ga------UGUUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 111293 0.66 0.994703
Target:  5'- -cGCCGCGgggagagggcCGCCGAUCgcgGCucccuuuCGACGc -3'
miRNA:   3'- cuUGGCGU----------GCGGCUAGa--UGuu-----GCUGC- -5'
9069 3' -52.4 NC_002512.2 + 152782 0.66 0.993893
Target:  5'- uGACCGcCGgGCCuccgucucggaGGUCcGCGGCGACGg -3'
miRNA:   3'- cUUGGC-GUgCGG-----------CUAGaUGUUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 73710 0.66 0.994703
Target:  5'- uGACCaugaGCugGUCGcgCUcgaGCAGCGACa -3'
miRNA:   3'- cUUGG----CGugCGGCuaGA---UGUUGCUGc -5'
9069 3' -52.4 NC_002512.2 + 45423 0.66 0.992985
Target:  5'- cGACgGCgGCGCCGG-CcGCGGCGACu -3'
miRNA:   3'- cUUGgCG-UGCGGCUaGaUGUUGCUGc -5'
9069 3' -52.4 NC_002512.2 + 45351 0.66 0.994779
Target:  5'- --cCCGCGcCGCCGGcugaccccgcgacugCUGCGACGAgGa -3'
miRNA:   3'- cuuGGCGU-GCGGCUa--------------GAUGUUGCUgC- -5'
9069 3' -52.4 NC_002512.2 + 91666 0.66 0.994703
Target:  5'- uGAGCUGCGCGCgGAcguccgUCgGCccCGACGg -3'
miRNA:   3'- -CUUGGCGUGCGgCU------AGaUGuuGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 13080 0.66 0.992985
Target:  5'- cGAcCCGCgACGCC-AUCguCAACGACGc -3'
miRNA:   3'- -CUuGGCG-UGCGGcUAGauGUUGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.