miRNA display CGI


Results 1 - 20 of 280 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9069 3' -52.4 NC_002512.2 + 168 0.7 0.938067
Target:  5'- aGGAgCGCGCGCCGGgagggACGGgGGCGa -3'
miRNA:   3'- -CUUgGCGUGCGGCUaga--UGUUgCUGC- -5'
9069 3' -52.4 NC_002512.2 + 3438 0.66 0.996063
Target:  5'- --cUCGCgGgGCUGGUCggugACGGCGACGa -3'
miRNA:   3'- cuuGGCG-UgCGGCUAGa---UGUUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 4552 0.69 0.965716
Target:  5'- aGGCgGCGCGaCCGAcggcugcggcgUCUGgGGCGGCGg -3'
miRNA:   3'- cUUGgCGUGC-GGCU-----------AGAUgUUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 4724 0.71 0.922783
Target:  5'- -uGCUGCAacgcCGCCGAcgaCUGCGACGGCu -3'
miRNA:   3'- cuUGGCGU----GCGGCUa--GAUGUUGCUGc -5'
9069 3' -52.4 NC_002512.2 + 4870 0.71 0.922783
Target:  5'- -cGCCGCgugcgGCGCCGG-CUggaggaGCGGCGACGg -3'
miRNA:   3'- cuUGGCG-----UGCGGCUaGA------UGUUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 5163 0.66 0.996627
Target:  5'- cAGCgGCGCGaCCGGg--GCGGCGGCc -3'
miRNA:   3'- cUUGgCGUGC-GGCUagaUGUUGCUGc -5'
9069 3' -52.4 NC_002512.2 + 5206 0.72 0.892654
Target:  5'- aGGACCGCGgGCCagccgACGGCGGCGg -3'
miRNA:   3'- -CUUGGCGUgCGGcuagaUGUUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 5246 0.7 0.938067
Target:  5'- cGGGCgCGUAgGCCGAggCcGCGGCGGCGa -3'
miRNA:   3'- -CUUG-GCGUgCGGCUa-GaUGUUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 5807 0.66 0.993893
Target:  5'- aAACCGC-CGCCGcccCguuCGGCGGCGu -3'
miRNA:   3'- cUUGGCGuGCGGCua-Gau-GUUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 8420 0.68 0.979163
Target:  5'- gGAACgCGCACcgcgGCCGGUCggACGACcGCGc -3'
miRNA:   3'- -CUUG-GCGUG----CGGCUAGa-UGUUGcUGC- -5'
9069 3' -52.4 NC_002512.2 + 8728 0.67 0.991974
Target:  5'- cGGCCGCGCGCgccCGcccguCGACGACGg -3'
miRNA:   3'- cUUGGCGUGCG---GCuagauGUUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 9961 0.69 0.965716
Target:  5'- --cCCGCGCGUCGA-CggagacCGACGACGa -3'
miRNA:   3'- cuuGGCGUGCGGCUaGau----GUUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 10217 0.66 0.995424
Target:  5'- cGGGCgGCGCGCCcaGAUCc-CGACgGGCGa -3'
miRNA:   3'- -CUUGgCGUGCGG--CUAGauGUUG-CUGC- -5'
9069 3' -52.4 NC_002512.2 + 10465 0.67 0.991974
Target:  5'- aGGCCGC-CGCCGccccggGCGugGGCGu -3'
miRNA:   3'- cUUGGCGuGCGGCuaga--UGUugCUGC- -5'
9069 3' -52.4 NC_002512.2 + 10841 0.68 0.979163
Target:  5'- gGAGCCcCGCGCCGcggc-CGACGACGu -3'
miRNA:   3'- -CUUGGcGUGCGGCuagauGUUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 12064 0.77 0.653901
Target:  5'- cGAACCGCcCGCCgucgacGAUCgggACGGCGACGc -3'
miRNA:   3'- -CUUGGCGuGCGG------CUAGa--UGUUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 12370 0.68 0.976853
Target:  5'- uGAACCGCGaccccccgagcuCGCCu-UCggGCGGCGGCGg -3'
miRNA:   3'- -CUUGGCGU------------GCGGcuAGa-UGUUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 13080 0.66 0.992985
Target:  5'- cGAcCCGCgACGCC-AUCguCAACGACGc -3'
miRNA:   3'- -CUuGGCG-UGCGGcUAGauGUUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 13346 0.69 0.962427
Target:  5'- --uUCGCGCGCCGcugCUACGACucgGGCGc -3'
miRNA:   3'- cuuGGCGUGCGGCua-GAUGUUG---CUGC- -5'
9069 3' -52.4 NC_002512.2 + 15120 0.77 0.664004
Target:  5'- cGACCG-GCGCCGGaCUGCGACGGCa -3'
miRNA:   3'- cUUGGCgUGCGGCUaGAUGUUGCUGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.