miRNA display CGI


Results 21 - 40 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9069 3' -52.4 NC_002512.2 + 16958 0.66 0.996063
Target:  5'- cGGACCGgGCGcCCGAUCgaaGAUGcCGu -3'
miRNA:   3'- -CUUGGCgUGC-GGCUAGaugUUGCuGC- -5'
9069 3' -52.4 NC_002512.2 + 20274 0.67 0.988233
Target:  5'- cGGCCGCAgGUCGuacAUCU-CGugGACGu -3'
miRNA:   3'- cUUGGCGUgCGGC---UAGAuGUugCUGC- -5'
9069 3' -52.4 NC_002512.2 + 20719 0.71 0.928112
Target:  5'- aGGAUCuuGCGCGCCGugccgACGACGACGu -3'
miRNA:   3'- -CUUGG--CGUGCGGCuaga-UGUUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 21738 0.72 0.891993
Target:  5'- cGGACCGCGCGgaccgcuCCGAUCUGCG--GACu -3'
miRNA:   3'- -CUUGGCGUGC-------GGCUAGAUGUugCUGc -5'
9069 3' -52.4 NC_002512.2 + 22619 0.67 0.991974
Target:  5'- gGGAgUGCAUGCgcgaGAUCUGCGACaaccuGACGa -3'
miRNA:   3'- -CUUgGCGUGCGg---CUAGAUGUUG-----CUGC- -5'
9069 3' -52.4 NC_002512.2 + 22788 0.71 0.922783
Target:  5'- cGAGCUGCGCGCCcg-CUaccACAAgGGCGg -3'
miRNA:   3'- -CUUGGCGUGCGGcuaGA---UGUUgCUGC- -5'
9069 3' -52.4 NC_002512.2 + 23233 0.66 0.993806
Target:  5'- --uCCGCACGgCGAUCggcgaACAcgggcagaugaucACGACGu -3'
miRNA:   3'- cuuGGCGUGCgGCUAGa----UGU-------------UGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 23336 0.71 0.933206
Target:  5'- cGGGCCGC-CGgCGGUgUACGaguGCGGCGa -3'
miRNA:   3'- -CUUGGCGuGCgGCUAgAUGU---UGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 23430 0.66 0.995424
Target:  5'- ---aCGCugGCCGugc-GCAGCGACu -3'
miRNA:   3'- cuugGCGugCGGCuagaUGUUGCUGc -5'
9069 3' -52.4 NC_002512.2 + 23890 0.7 0.951261
Target:  5'- aGGCgGCGCugaaGCUGAUCaagUGCAACGACGc -3'
miRNA:   3'- cUUGgCGUG----CGGCUAG---AUGUUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 24843 0.69 0.971677
Target:  5'- cGGGCC-CGCgGCCGGUCgGCGGCgGACGc -3'
miRNA:   3'- -CUUGGcGUG-CGGCUAGaUGUUG-CUGC- -5'
9069 3' -52.4 NC_002512.2 + 24921 0.69 0.968798
Target:  5'- --cCCGCgGCGUCGggCUcggcccGCAGCGACGa -3'
miRNA:   3'- cuuGGCG-UGCGGCuaGA------UGUUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 26427 0.67 0.987344
Target:  5'- cGAACCGCucguacagcgugucgACGCCGAcccUgUACA-UGACGa -3'
miRNA:   3'- -CUUGGCG---------------UGCGGCU---AgAUGUuGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 28186 0.7 0.958924
Target:  5'- -cGCCGC-CGCCGAUCccGCAccaGACGc -3'
miRNA:   3'- cuUGGCGuGCGGCUAGa-UGUug-CUGC- -5'
9069 3' -52.4 NC_002512.2 + 28244 0.76 0.723793
Target:  5'- gGGGCCGuCGCGCCGcGagUACGACGGCGc -3'
miRNA:   3'- -CUUGGC-GUGCGGC-UagAUGUUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 29322 0.67 0.991974
Target:  5'- cGGACCGCGgGCgCGAUUccccccgaUACcGCGACc -3'
miRNA:   3'- -CUUGGCGUgCG-GCUAG--------AUGuUGCUGc -5'
9069 3' -52.4 NC_002512.2 + 29743 0.7 0.958924
Target:  5'- uGGCgGCGCGCgagggggcccggCGAUCgacGCGACGGCGa -3'
miRNA:   3'- cUUGgCGUGCG------------GCUAGa--UGUUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 30657 0.71 0.911424
Target:  5'- cGGGCUGCGC-CgGAUCUACcgGGCGGCGc -3'
miRNA:   3'- -CUUGGCGUGcGgCUAGAUG--UUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 33139 0.67 0.991974
Target:  5'- -uACaCGC-CGCCGGUCgagccgUACAggACGACGa -3'
miRNA:   3'- cuUG-GCGuGCGGCUAG------AUGU--UGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 34037 0.67 0.991867
Target:  5'- --uCCGCgaGCGCCGGUugCUcgaggcgugccccACGACGGCGg -3'
miRNA:   3'- cuuGGCG--UGCGGCUA--GA-------------UGUUGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.