miRNA display CGI


Results 1 - 20 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9069 3' -52.4 NC_002512.2 + 229571 0.7 0.938067
Target:  5'- aGGAgCGCGCGCCGGgagggACGGgGGCGa -3'
miRNA:   3'- -CUUgGCGUGCGGCUaga--UGUUgCUGC- -5'
9069 3' -52.4 NC_002512.2 + 227681 0.72 0.885945
Target:  5'- -cGCCGCcgGCGaCCGAg--ACGACGACGg -3'
miRNA:   3'- cuUGGCG--UGC-GGCUagaUGUUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 226000 0.67 0.991974
Target:  5'- gGGACCGgGaCGCCGGUgCUGacuccgagGACGACGu -3'
miRNA:   3'- -CUUGGCgU-GCGGCUA-GAUg-------UUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 224794 0.73 0.84125
Target:  5'- --cCCGCccGCGCCGAcgCcgGCGACGACGa -3'
miRNA:   3'- cuuGGCG--UGCGGCUa-Ga-UGUUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 224076 0.68 0.976853
Target:  5'- ---aCGC-CGCCGAaCgggGCGGCGGCGg -3'
miRNA:   3'- cuugGCGuGCGGCUaGa--UGUUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 223990 0.68 0.981298
Target:  5'- --cCCGCGCGCCccgccGUCcACgAGCGACGa -3'
miRNA:   3'- cuuGGCGUGCGGc----UAGaUG-UUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 223807 0.69 0.968798
Target:  5'- cGGCgGCGacCGCCGGg--ACGACGACGg -3'
miRNA:   3'- cUUGgCGU--GCGGCUagaUGUUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 223487 0.66 0.994703
Target:  5'- -cGCCGC-CGCCGccucccugcccGUC-GCGACGACc -3'
miRNA:   3'- cuUGGCGuGCGGC-----------UAGaUGUUGCUGc -5'
9069 3' -52.4 NC_002512.2 + 222531 0.71 0.922783
Target:  5'- cGGCCGCcgucgcgguGgGCCGggCUACGGCGACc -3'
miRNA:   3'- cUUGGCG---------UgCGGCuaGAUGUUGCUGc -5'
9069 3' -52.4 NC_002512.2 + 222301 0.72 0.893312
Target:  5'- cGACCGCugcCGCCGGaggcgguaccggaggCUGCGGCGGCGc -3'
miRNA:   3'- cUUGGCGu--GCGGCUa--------------GAUGUUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 221775 0.66 0.992985
Target:  5'- cGGCCGUcguguccugGCGCCuGcUCUACGccgGCGACGa -3'
miRNA:   3'- cUUGGCG---------UGCGG-CuAGAUGU---UGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 220825 0.67 0.99085
Target:  5'- -cGCCGCugGCCG---UGCucguCGACGg -3'
miRNA:   3'- cuUGGCGugCGGCuagAUGuu--GCUGC- -5'
9069 3' -52.4 NC_002512.2 + 220607 0.68 0.983264
Target:  5'- cGugCGCGagcuggugcugUGCCGGgaCUGCGACGACGu -3'
miRNA:   3'- cUugGCGU-----------GCGGCUa-GAUGUUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 220434 0.69 0.968798
Target:  5'- cGGCCaGC-CGCCGGagcUCUACGugGGCu -3'
miRNA:   3'- cUUGG-CGuGCGGCU---AGAUGUugCUGc -5'
9069 3' -52.4 NC_002512.2 + 219419 0.66 0.996063
Target:  5'- -cGCC-CACGcCCGGg--GCGGCGGCGg -3'
miRNA:   3'- cuUGGcGUGC-GGCUagaUGUUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 219024 0.67 0.989606
Target:  5'- -uGCUGCGacgUGCUGGUCUACGucgucggccGCGGCGc -3'
miRNA:   3'- cuUGGCGU---GCGGCUAGAUGU---------UGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 218231 0.68 0.98507
Target:  5'- cGGGCCGCgGCGCCGAUaUAUGuccggguCGGCGu -3'
miRNA:   3'- -CUUGGCG-UGCGGCUAgAUGUu------GCUGC- -5'
9069 3' -52.4 NC_002512.2 + 217547 0.69 0.962427
Target:  5'- uGAACCGgGCGuuGuuGUCgcguucGCGACGGCGa -3'
miRNA:   3'- -CUUGGCgUGCggC--UAGa-----UGUUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 217294 0.74 0.833113
Target:  5'- cGGACCGCGCGCCGGgagAUGAuCGGCu -3'
miRNA:   3'- -CUUGGCGUGCGGCUagaUGUU-GCUGc -5'
9069 3' -52.4 NC_002512.2 + 217111 0.73 0.84125
Target:  5'- gGGGgCGC-CGCCGAgucCUGCGGCGGCa -3'
miRNA:   3'- -CUUgGCGuGCGGCUa--GAUGUUGCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.