miRNA display CGI


Results 1 - 20 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9069 3' -52.4 NC_002512.2 + 105606 0.72 0.885945
Target:  5'- cGAGCCGCACGCCcgGGUC--CGACGcCGc -3'
miRNA:   3'- -CUUGGCGUGCGG--CUAGauGUUGCuGC- -5'
9069 3' -52.4 NC_002512.2 + 99685 0.74 0.807655
Target:  5'- aGGACCaCugGCCGAUCaUGCGACGGg- -3'
miRNA:   3'- -CUUGGcGugCGGCUAG-AUGUUGCUgc -5'
9069 3' -52.4 NC_002512.2 + 96699 0.74 0.816308
Target:  5'- -cGCCGCGUGCCGGaCUGCGugGugGu -3'
miRNA:   3'- cuUGGCGUGCGGCUaGAUGUugCugC- -5'
9069 3' -52.4 NC_002512.2 + 97176 0.74 0.817164
Target:  5'- cGGGCCGaggaucucgcccacgACGCCcGUCUGCGGCGGCGg -3'
miRNA:   3'- -CUUGGCg--------------UGCGGcUAGAUGUUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 59240 0.73 0.849202
Target:  5'- aAACCGCAgGCCGAg--GCGcCGGCGg -3'
miRNA:   3'- cUUGGCGUgCGGCUagaUGUuGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 137996 0.73 0.871874
Target:  5'- cGGGCCGUGCGCCGcgCcGCcgcccgcgccgGACGGCGg -3'
miRNA:   3'- -CUUGGCGUGCGGCuaGaUG-----------UUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 83353 0.72 0.879017
Target:  5'- --uCCGCAUGCuCGGUCgGCGAUGugGa -3'
miRNA:   3'- cuuGGCGUGCG-GCUAGaUGUUGCugC- -5'
9069 3' -52.4 NC_002512.2 + 111983 0.72 0.879017
Target:  5'- uGGCgCGCugGCCGuggaGCAGCGACGg -3'
miRNA:   3'- cUUG-GCGugCGGCuagaUGUUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 126201 0.72 0.879017
Target:  5'- -cGCCGCGucCGCCGcccUCUGCGACGuCGa -3'
miRNA:   3'- cuUGGCGU--GCGGCu--AGAUGUUGCuGC- -5'
9069 3' -52.4 NC_002512.2 + 118461 0.75 0.789891
Target:  5'- -uACUGCGCGCaGAUCUACAucgaguACGGCGc -3'
miRNA:   3'- cuUGGCGUGCGgCUAGAUGU------UGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 47757 0.75 0.762224
Target:  5'- gGAGCUGCACGCCuucaacGAcuUCUGC-GCGACGa -3'
miRNA:   3'- -CUUGGCGUGCGG------CU--AGAUGuUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 101662 0.76 0.732568
Target:  5'- cGGCCGCggacgccGgGCCGAUCUACGuCGGCGg -3'
miRNA:   3'- cUUGGCG-------UgCGGCUAGAUGUuGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 122299 0.79 0.553191
Target:  5'- cGAGCCGCACGUCGAcgagaUCaACAugGugGg -3'
miRNA:   3'- -CUUGGCGUGCGGCU-----AGaUGUugCugC- -5'
9069 3' -52.4 NC_002512.2 + 39686 0.78 0.593202
Target:  5'- cGACCGCGcCGCCGAccuUCUGCAGCcggGGCGa -3'
miRNA:   3'- cUUGGCGU-GCGGCU---AGAUGUUG---CUGC- -5'
9069 3' -52.4 NC_002512.2 + 71018 0.78 0.593202
Target:  5'- gGGGCCGcCGCcgGCCGGUCgACGACGACGu -3'
miRNA:   3'- -CUUGGC-GUG--CGGCUAGaUGUUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 49341 0.78 0.633653
Target:  5'- -cGCCGCaaGCGCCGAUCgACGACGAa- -3'
miRNA:   3'- cuUGGCG--UGCGGCUAGaUGUUGCUgc -5'
9069 3' -52.4 NC_002512.2 + 121780 0.77 0.643781
Target:  5'- cGGACCGCcgaggcggggACGCCGAag-ACGACGACGa -3'
miRNA:   3'- -CUUGGCG----------UGCGGCUagaUGUUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 12064 0.77 0.653901
Target:  5'- cGAACCGCcCGCCgucgacGAUCgggACGGCGACGc -3'
miRNA:   3'- -CUUGGCGuGCGG------CUAGa--UGUUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 15120 0.77 0.664004
Target:  5'- cGACCG-GCGCCGGaCUGCGACGGCa -3'
miRNA:   3'- cUUGGCgUGCGGCUaGAUGUUGCUGc -5'
9069 3' -52.4 NC_002512.2 + 28244 0.76 0.723793
Target:  5'- gGGGCCGuCGCGCCGcGagUACGACGGCGc -3'
miRNA:   3'- -CUUGGC-GUGCGGC-UagAUGUUGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.