miRNA display CGI


Results 1 - 20 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9069 3' -52.4 NC_002512.2 + 213495 0.66 0.996627
Target:  5'- -cACUGCGCGCCcGUCgacuuCGAgGGCGu -3'
miRNA:   3'- cuUGGCGUGCGGcUAGau---GUUgCUGC- -5'
9069 3' -52.4 NC_002512.2 + 201331 0.66 0.994703
Target:  5'- -uGCCGCGacgucagcgugGCCGAcaUCggGCGGCGGCGg -3'
miRNA:   3'- cuUGGCGUg----------CGGCU--AGa-UGUUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 37732 0.66 0.994703
Target:  5'- ---aUGCACGUcaaggCGGUC-ACGACGACGg -3'
miRNA:   3'- cuugGCGUGCG-----GCUAGaUGUUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 137114 1.08 0.011531
Target:  5'- uGAACCGCACGCCGAUCUACAACGACGu -3'
miRNA:   3'- -CUUGGCGUGCGGCUAGAUGUUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 90025 0.66 0.996627
Target:  5'- --cCCGCAcuCGUCGAUg-ACGAUGACGu -3'
miRNA:   3'- cuuGGCGU--GCGGCUAgaUGUUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 88283 0.66 0.996063
Target:  5'- cGACCGCca--CGGUCUGCAGCGuCa -3'
miRNA:   3'- cUUGGCGugcgGCUAGAUGUUGCuGc -5'
9069 3' -52.4 NC_002512.2 + 146178 0.66 0.996063
Target:  5'- -uGCCGCGCgGCaCGGUCgcccugggcuCGACGACc -3'
miRNA:   3'- cuUGGCGUG-CG-GCUAGau--------GUUGCUGc -5'
9069 3' -52.4 NC_002512.2 + 101607 0.66 0.996063
Target:  5'- --cCCGCACGagagGAUCUGggUGACGGCGg -3'
miRNA:   3'- cuuGGCGUGCgg--CUAGAU--GUUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 123571 0.66 0.996063
Target:  5'- aGAGCCGCcgaagGCGCUgcgGGUCUgagaggacGCcGCGGCGg -3'
miRNA:   3'- -CUUGGCG-----UGCGG---CUAGA--------UGuUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 111257 0.66 0.995424
Target:  5'- cGGGCgGCACGCgGAcgagCUugAuguCGACGu -3'
miRNA:   3'- -CUUGgCGUGCGgCUa---GAugUu--GCUGC- -5'
9069 3' -52.4 NC_002512.2 + 142077 0.66 0.995424
Target:  5'- cGACCGcCGCGCCcgcCU-CGACGACa -3'
miRNA:   3'- cUUGGC-GUGCGGcuaGAuGUUGCUGc -5'
9069 3' -52.4 NC_002512.2 + 156036 0.66 0.996063
Target:  5'- gGGGCCaguGCAUGCgGGUCgucgAC-ACGGCGa -3'
miRNA:   3'- -CUUGG---CGUGCGgCUAGa---UGuUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 209512 0.66 0.996627
Target:  5'- gGGACCGC-UGUUacGUCUACAGCGAgGa -3'
miRNA:   3'- -CUUGGCGuGCGGc-UAGAUGUUGCUgC- -5'
9069 3' -52.4 NC_002512.2 + 91872 0.66 0.995424
Target:  5'- aGGCCGC-CGuCCGG-CgcggGCGGCGGCGc -3'
miRNA:   3'- cUUGGCGuGC-GGCUaGa---UGUUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 146268 0.66 0.996627
Target:  5'- uGGGCCGCcugaACGCCGuGUCcaacccCGGCGACu -3'
miRNA:   3'- -CUUGGCG----UGCGGC-UAGau----GUUGCUGc -5'
9069 3' -52.4 NC_002512.2 + 40111 0.66 0.996063
Target:  5'- aGAACCuauCGCGCCGuuucUUUGCAACGGu- -3'
miRNA:   3'- -CUUGGc--GUGCGGCu---AGAUGUUGCUgc -5'
9069 3' -52.4 NC_002512.2 + 118021 0.66 0.995424
Target:  5'- gGAcCCGUACGaCGAggacGCGGCGACGg -3'
miRNA:   3'- -CUuGGCGUGCgGCUaga-UGUUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 193070 0.66 0.994703
Target:  5'- cAACgGCACGgaGAUgUGCuGCGGCGa -3'
miRNA:   3'- cUUGgCGUGCggCUAgAUGuUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 114006 0.66 0.996627
Target:  5'- --cCCGC-CGCCG-UCggccccGCAGCGGCa -3'
miRNA:   3'- cuuGGCGuGCGGCuAGa-----UGUUGCUGc -5'
9069 3' -52.4 NC_002512.2 + 219419 0.66 0.996063
Target:  5'- -cGCC-CACGcCCGGg--GCGGCGGCGg -3'
miRNA:   3'- cuUGGcGUGC-GGCUagaUGUUGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.