miRNA display CGI


Results 21 - 40 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9069 3' -52.4 NC_002512.2 + 119403 0.66 0.996063
Target:  5'- aGGGCCGCGUGCCG--CUGCucgggAGCGugGa -3'
miRNA:   3'- -CUUGGCGUGCGGCuaGAUG-----UUGCugC- -5'
9069 3' -52.4 NC_002512.2 + 3438 0.66 0.996063
Target:  5'- --cUCGCgGgGCUGGUCggugACGGCGACGa -3'
miRNA:   3'- cuuGGCG-UgCGGCUAGa---UGUUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 128123 0.66 0.996063
Target:  5'- -cGCCGUcuCGCCGAaggUCagGCGGCGGCu -3'
miRNA:   3'- cuUGGCGu-GCGGCU---AGa-UGUUGCUGc -5'
9069 3' -52.4 NC_002512.2 + 42705 0.66 0.996063
Target:  5'- -cGCCgGCACGCCGAa----GAUGGCGg -3'
miRNA:   3'- cuUGG-CGUGCGGCUagaugUUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 16958 0.66 0.996063
Target:  5'- cGGACCGgGCGcCCGAUCgaaGAUGcCGu -3'
miRNA:   3'- -CUUGGCgUGC-GGCUAGaugUUGCuGC- -5'
9069 3' -52.4 NC_002512.2 + 118714 0.66 0.996063
Target:  5'- --cCCGCcUGCCGcUCgcCGGCGACGu -3'
miRNA:   3'- cuuGGCGuGCGGCuAGauGUUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 59331 0.66 0.996002
Target:  5'- aGAACUGCgaccuggACGCgGAgCUGCAGCGGa- -3'
miRNA:   3'- -CUUGGCG-------UGCGgCUaGAUGUUGCUgc -5'
9069 3' -52.4 NC_002512.2 + 117003 0.66 0.995817
Target:  5'- cGGCCGCACGCagggcgggcgcaaGAUCauCGGCGGCc -3'
miRNA:   3'- cUUGGCGUGCGg------------CUAGauGUUGCUGc -5'
9069 3' -52.4 NC_002512.2 + 91872 0.66 0.995424
Target:  5'- aGGCCGC-CGuCCGG-CgcggGCGGCGGCGc -3'
miRNA:   3'- cUUGGCGuGC-GGCUaGa---UGUUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 115467 0.66 0.995424
Target:  5'- cGGACCGCGugggaGCCGGUCgagaugagcGCGAgUGGCGg -3'
miRNA:   3'- -CUUGGCGUg----CGGCUAGa--------UGUU-GCUGC- -5'
9069 3' -52.4 NC_002512.2 + 23430 0.66 0.995424
Target:  5'- ---aCGCugGCCGugc-GCAGCGACu -3'
miRNA:   3'- cuugGCGugCGGCuagaUGUUGCUGc -5'
9069 3' -52.4 NC_002512.2 + 140898 0.66 0.995424
Target:  5'- --cCCGCGCuCCGGgu--CGACGACGg -3'
miRNA:   3'- cuuGGCGUGcGGCUagauGUUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 54621 0.66 0.995424
Target:  5'- cGGCCGCcagcuaccCGCCGAgcgCggcccugGCGACGAUGg -3'
miRNA:   3'- cUUGGCGu-------GCGGCUa--Ga------UGUUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 10217 0.66 0.995424
Target:  5'- cGGGCgGCGCGCCcaGAUCc-CGACgGGCGa -3'
miRNA:   3'- -CUUGgCGUGCGG--CUAGauGUUG-CUGC- -5'
9069 3' -52.4 NC_002512.2 + 110810 0.66 0.995424
Target:  5'- --cUCGCGCGaCCGGUCgagggACAGCaGCGc -3'
miRNA:   3'- cuuGGCGUGC-GGCUAGa----UGUUGcUGC- -5'
9069 3' -52.4 NC_002512.2 + 118021 0.66 0.995424
Target:  5'- gGAcCCGUACGaCGAggacGCGGCGACGg -3'
miRNA:   3'- -CUuGGCGUGCgGCUaga-UGUUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 203763 0.66 0.995424
Target:  5'- aAAUgGCACG-CGA-CUugAACGACGa -3'
miRNA:   3'- cUUGgCGUGCgGCUaGAugUUGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 142077 0.66 0.995424
Target:  5'- cGACCGcCGCGCCcgcCU-CGACGACa -3'
miRNA:   3'- cUUGGC-GUGCGGcuaGAuGUUGCUGc -5'
9069 3' -52.4 NC_002512.2 + 185355 0.66 0.995424
Target:  5'- -cGCCGCcauCGCCGucgaCUGCGacaccuucgGCGGCGg -3'
miRNA:   3'- cuUGGCGu--GCGGCua--GAUGU---------UGCUGC- -5'
9069 3' -52.4 NC_002512.2 + 123454 0.66 0.995424
Target:  5'- cGACCGCugGUUcgGGUCggACAACG-CGg -3'
miRNA:   3'- cUUGGCGugCGG--CUAGa-UGUUGCuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.