miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9073 5' -60.9 NC_002512.2 + 170372 0.66 0.785692
Target:  5'- aGG-GC-CGUGcgCGGCGcCGCgCUGCa -3'
miRNA:   3'- -CCaCGuGCGCaaGCCGC-GCGgGACGc -5'
9073 5' -60.9 NC_002512.2 + 169519 0.68 0.692111
Target:  5'- aGGUGUACGCGUccagcucgaacgggUccCGGC-UGCCCgGCGg -3'
miRNA:   3'- -CCACGUGCGCA--------------A--GCCGcGCGGGaCGC- -5'
9073 5' -60.9 NC_002512.2 + 166850 0.69 0.64737
Target:  5'- gGGaGCACGUc--CGGCGCuCCCUGCu -3'
miRNA:   3'- -CCaCGUGCGcaaGCCGCGcGGGACGc -5'
9073 5' -60.9 NC_002512.2 + 165492 0.66 0.827006
Target:  5'- gGGUgGCuGCGCGUggGGCGCuucuCCCgGCGc -3'
miRNA:   3'- -CCA-CG-UGCGCAagCCGCGc---GGGaCGC- -5'
9073 5' -60.9 NC_002512.2 + 161509 0.67 0.76827
Target:  5'- uGGUGCgcuGCGCGgaCGGCacCGCCgaGCc -3'
miRNA:   3'- -CCACG---UGCGCaaGCCGc-GCGGgaCGc -5'
9073 5' -60.9 NC_002512.2 + 152455 0.66 0.819027
Target:  5'- cGG-GCGCGCGgcguugggaGGCGUcccggGUCCUGUGa -3'
miRNA:   3'- -CCaCGUGCGCaag------CCGCG-----CGGGACGC- -5'
9073 5' -60.9 NC_002512.2 + 151103 0.69 0.666479
Target:  5'- cGUGCACGUGUcUCGGgGCGCg--GUGg -3'
miRNA:   3'- cCACGUGCGCA-AGCCgCGCGggaCGC- -5'
9073 5' -60.9 NC_002512.2 + 149166 0.69 0.637796
Target:  5'- cGGUGCcgccCGCGggCccGCGCGCCCUcGCc -3'
miRNA:   3'- -CCACGu---GCGCaaGc-CGCGCGGGA-CGc -5'
9073 5' -60.9 NC_002512.2 + 147470 0.66 0.8109
Target:  5'- -cUGCugGUcUUCGcGCGgGCgCUGCGg -3'
miRNA:   3'- ccACGugCGcAAGC-CGCgCGgGACGC- -5'
9073 5' -60.9 NC_002512.2 + 146080 0.68 0.685491
Target:  5'- --cGC-CGCcgcCGGCGCGCCCgacGCGg -3'
miRNA:   3'- ccaCGuGCGcaaGCCGCGCGGGa--CGC- -5'
9073 5' -60.9 NC_002512.2 + 145615 0.66 0.8109
Target:  5'- --gGCGgGCGUUCGGCccGCuGCCCgccuuccGCGu -3'
miRNA:   3'- ccaCGUgCGCAAGCCG--CG-CGGGa------CGC- -5'
9073 5' -60.9 NC_002512.2 + 143167 0.66 0.785692
Target:  5'- cGGUugGC-CGCccucUCGuaguGCGCGCCCUGCa -3'
miRNA:   3'- -CCA--CGuGCGca--AGC----CGCGCGGGACGc -5'
9073 5' -60.9 NC_002512.2 + 138954 0.66 0.794225
Target:  5'- --cGCACGCcc-CGGuCGCGCCCgucaGCa -3'
miRNA:   3'- ccaCGUGCGcaaGCC-GCGCGGGa---CGc -5'
9073 5' -60.9 NC_002512.2 + 137199 0.73 0.444465
Target:  5'- cGGUcCGCccgGUGggCGGCGCGCCCgGCGc -3'
miRNA:   3'- -CCAcGUG---CGCaaGCCGCGCGGGaCGC- -5'
9073 5' -60.9 NC_002512.2 + 137096 0.67 0.76827
Target:  5'- cGGUGUGCGCcca-GGCGCGCggggUGCGa -3'
miRNA:   3'- -CCACGUGCGcaagCCGCGCGgg--ACGC- -5'
9073 5' -60.9 NC_002512.2 + 136586 0.67 0.732214
Target:  5'- cGGUGCgcggguuggACGCGUacagguagCGGgcCGCGCCCUccaGCGu -3'
miRNA:   3'- -CCACG---------UGCGCAa-------GCC--GCGCGGGA---CGC- -5'
9073 5' -60.9 NC_002512.2 + 136494 1.11 0.001363
Target:  5'- aGGUGCACGCGUUCGGCGCGCCCUGCGg -3'
miRNA:   3'- -CCACGUGCGCAAGCCGCGCGGGACGC- -5'
9073 5' -60.9 NC_002512.2 + 136222 0.66 0.819027
Target:  5'- uGGUGCGCGgGggUCaGCGUGCUggGCu -3'
miRNA:   3'- -CCACGUGCgCa-AGcCGCGCGGgaCGc -5'
9073 5' -60.9 NC_002512.2 + 135092 0.67 0.76827
Target:  5'- --cGCGucuacCGCG-UCGuGCGCGCCCUGg- -3'
miRNA:   3'- ccaCGU-----GCGCaAGC-CGCGCGGGACgc -5'
9073 5' -60.9 NC_002512.2 + 133576 0.68 0.694942
Target:  5'- cGUGCG-GCGacCGGCcCGCCCgcgGCGg -3'
miRNA:   3'- cCACGUgCGCaaGCCGcGCGGGa--CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.