miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9073 5' -60.9 NC_002512.2 + 200837 0.67 0.76827
Target:  5'- aGGUcaGCGgGgGcgCGGCGCGUCuCUGCc -3'
miRNA:   3'- -CCA--CGUgCgCaaGCCGCGCGG-GACGc -5'
9073 5' -60.9 NC_002512.2 + 133394 0.66 0.785692
Target:  5'- cGGUGCcCGUGggCGacGCcaugGCGCCCcGCGg -3'
miRNA:   3'- -CCACGuGCGCaaGC--CG----CGCGGGaCGC- -5'
9073 5' -60.9 NC_002512.2 + 190950 0.66 0.800959
Target:  5'- gGGcGCACGCGggcgcccgccgCGGCG-GCCCcuccgGCGc -3'
miRNA:   3'- -CCaCGUGCGCaa---------GCCGCgCGGGa----CGC- -5'
9073 5' -60.9 NC_002512.2 + 223533 0.66 0.827006
Target:  5'- --gGCACGCGcccgCGGCccGCGgCCCcGCGc -3'
miRNA:   3'- ccaCGUGCGCaa--GCCG--CGC-GGGaCGC- -5'
9073 5' -60.9 NC_002512.2 + 113673 0.69 0.656933
Target:  5'- gGGUGCGCGCGggUCGGacguugGCGCCgaagaGCa -3'
miRNA:   3'- -CCACGUGCGCa-AGCCg-----CGCGGga---CGc -5'
9073 5' -60.9 NC_002512.2 + 133576 0.68 0.694942
Target:  5'- cGUGCG-GCGacCGGCcCGCCCgcgGCGg -3'
miRNA:   3'- cCACGUgCGCaaGCCGcGCGGGa--CGC- -5'
9073 5' -60.9 NC_002512.2 + 170372 0.66 0.785692
Target:  5'- aGG-GC-CGUGcgCGGCGcCGCgCUGCa -3'
miRNA:   3'- -CCaCGuGCGCaaGCCGC-GCGgGACGc -5'
9073 5' -60.9 NC_002512.2 + 171676 0.66 0.827006
Target:  5'- --cGCGCGCGg--GGUGCGCgCC-GCGc -3'
miRNA:   3'- ccaCGUGCGCaagCCGCGCG-GGaCGC- -5'
9073 5' -60.9 NC_002512.2 + 202417 0.68 0.694942
Target:  5'- --cGCGCGCGgaacagUGGCGUGaCCC-GCGg -3'
miRNA:   3'- ccaCGUGCGCaa----GCCGCGC-GGGaCGC- -5'
9073 5' -60.9 NC_002512.2 + 181005 0.66 0.827006
Target:  5'- cGUGUugGUGUUCGuGUagagggaggcccGCGUCCUGgGc -3'
miRNA:   3'- cCACGugCGCAAGC-CG------------CGCGGGACgC- -5'
9073 5' -60.9 NC_002512.2 + 143167 0.66 0.785692
Target:  5'- cGGUugGC-CGCccucUCGuaguGCGCGCCCUGCa -3'
miRNA:   3'- -CCA--CGuGCGca--AGC----CGCGCGGGACGc -5'
9073 5' -60.9 NC_002512.2 + 161509 0.67 0.76827
Target:  5'- uGGUGCgcuGCGCGgaCGGCacCGCCgaGCc -3'
miRNA:   3'- -CCACG---UGCGCaaGCCGc-GCGGgaCGc -5'
9073 5' -60.9 NC_002512.2 + 209768 0.66 0.794225
Target:  5'- --cGCucCGCGUcuuUCGGCaaGCCCgGCGg -3'
miRNA:   3'- ccaCGu-GCGCA---AGCCGcgCGGGaCGC- -5'
9073 5' -60.9 NC_002512.2 + 117070 0.66 0.800122
Target:  5'- cGGaGCACGCGca-GGCGCuggaggugcgggccGCCCUGg- -3'
miRNA:   3'- -CCaCGUGCGCaagCCGCG--------------CGGGACgc -5'
9073 5' -60.9 NC_002512.2 + 145615 0.66 0.8109
Target:  5'- --gGCGgGCGUUCGGCccGCuGCCCgccuuccGCGu -3'
miRNA:   3'- ccaCGUgCGCAAGCCG--CG-CGGGa------CGC- -5'
9073 5' -60.9 NC_002512.2 + 165492 0.66 0.827006
Target:  5'- gGGUgGCuGCGCGUggGGCGCuucuCCCgGCGc -3'
miRNA:   3'- -CCA-CG-UGCGCAagCCGCGc---GGGaCGC- -5'
9073 5' -60.9 NC_002512.2 + 95540 0.7 0.58429
Target:  5'- cGGUGCGggucuggagcucggcCGCGgcgaguccgUCGGCGCcgGCCCcgGCGa -3'
miRNA:   3'- -CCACGU---------------GCGCa--------AGCCGCG--CGGGa-CGC- -5'
9073 5' -60.9 NC_002512.2 + 166850 0.69 0.64737
Target:  5'- gGGaGCACGUc--CGGCGCuCCCUGCu -3'
miRNA:   3'- -CCaCGUGCGcaaGCCGCGcGGGACGc -5'
9073 5' -60.9 NC_002512.2 + 102460 0.68 0.676001
Target:  5'- --gGCGuCGCGgaggagGGCGCGCCCgucGCGg -3'
miRNA:   3'- ccaCGU-GCGCaag---CCGCGCGGGa--CGC- -5'
9073 5' -60.9 NC_002512.2 + 169519 0.68 0.692111
Target:  5'- aGGUGUACGCGUccagcucgaacgggUccCGGC-UGCCCgGCGg -3'
miRNA:   3'- -CCACGUGCGCA--------------A--GCCGcGCGGGaCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.