miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9095 3' -53.4 NC_002512.2 + 229871 0.68 0.973331
Target:  5'- gCCCCCgGggGAGGAggacCGGCccucacgACGGg-- -3'
miRNA:   3'- -GGGGGgCuuUUUCUa---GCCG-------UGCCacu -5'
9095 3' -53.4 NC_002512.2 + 226579 0.69 0.946248
Target:  5'- gCUCCCCGGccagGAGGGcgCGGCcCGGggGAg -3'
miRNA:   3'- -GGGGGGCU----UUUUCuaGCCGuGCCa-CU- -5'
9095 3' -53.4 NC_002512.2 + 226365 0.69 0.958079
Target:  5'- aCUCUCgCGAucGAAGGUCGGCGCG-UGGg -3'
miRNA:   3'- -GGGGG-GCUu-UUUCUAGCCGUGCcACU- -5'
9095 3' -53.4 NC_002512.2 + 222342 0.73 0.82508
Target:  5'- gCCUCCagGAGGAGGAggagCGGCACGGg-- -3'
miRNA:   3'- -GGGGGg-CUUUUUCUa---GCCGUGCCacu -5'
9095 3' -53.4 NC_002512.2 + 221595 0.71 0.904785
Target:  5'- -aCCCgGAGGGGGGUCGGUggACGGcGAg -3'
miRNA:   3'- ggGGGgCUUUUUCUAGCCG--UGCCaCU- -5'
9095 3' -53.4 NC_002512.2 + 216330 0.67 0.980613
Target:  5'- -gCCCCGAcgc-GGUCGGCGgcucgaucuUGGUGAa -3'
miRNA:   3'- ggGGGGCUuuuuCUAGCCGU---------GCCACU- -5'
9095 3' -53.4 NC_002512.2 + 213907 0.77 0.596472
Target:  5'- gCUCCCCGggGGAGAUCGacCGCGGcGAg -3'
miRNA:   3'- -GGGGGGCuuUUUCUAGCc-GUGCCaCU- -5'
9095 3' -53.4 NC_002512.2 + 213821 0.7 0.932408
Target:  5'- uUCCCUGGAcgagagucucGAGGcgCGGCGCGGgGAg -3'
miRNA:   3'- gGGGGGCUU----------UUUCuaGCCGUGCCaCU- -5'
9095 3' -53.4 NC_002512.2 + 208444 0.67 0.984449
Target:  5'- gCCCCCGAucGAGucggacGUCGGgAUGGcgGAc -3'
miRNA:   3'- gGGGGGCUuuUUC------UAGCCgUGCCa-CU- -5'
9095 3' -53.4 NC_002512.2 + 206984 0.71 0.902947
Target:  5'- gCCgCCCGGGAugcccguggcccgcGGGGUCaGCAUGGUGGc -3'
miRNA:   3'- -GGgGGGCUUU--------------UUCUAGcCGUGCCACU- -5'
9095 3' -53.4 NC_002512.2 + 206428 0.67 0.982611
Target:  5'- aUCUCCGugcguAGcgaCGGCGCGGUGAa -3'
miRNA:   3'- gGGGGGCuuuu-UCua-GCCGUGCCACU- -5'
9095 3' -53.4 NC_002512.2 + 205211 0.73 0.808162
Target:  5'- cCCCgCCCGAGcggcccgggacGGAGAUCGGgACGGa-- -3'
miRNA:   3'- -GGG-GGGCUU-----------UUUCUAGCCgUGCCacu -5'
9095 3' -53.4 NC_002512.2 + 202733 0.7 0.916517
Target:  5'- uCCCgCCCGAGGAAGG-CGuacaGCACGG-GAu -3'
miRNA:   3'- -GGG-GGGCUUUUUCUaGC----CGUGCCaCU- -5'
9095 3' -53.4 NC_002512.2 + 190191 0.72 0.871592
Target:  5'- uCgCCCCGGcugcAGAAGGUCGGCggcGCGGUc- -3'
miRNA:   3'- -GgGGGGCU----UUUUCUAGCCG---UGCCAcu -5'
9095 3' -53.4 NC_002512.2 + 189708 0.72 0.878659
Target:  5'- aCgUCCGggGGAuGUCGGgGCGGUGGg -3'
miRNA:   3'- gGgGGGCuuUUUcUAGCCgUGCCACU- -5'
9095 3' -53.4 NC_002512.2 + 187141 0.68 0.973331
Target:  5'- gCCCCUGuuccuGGGGUCGGggaggucCAUGGUGGa -3'
miRNA:   3'- gGGGGGCuuu--UUCUAGCC-------GUGCCACU- -5'
9095 3' -53.4 NC_002512.2 + 172844 0.68 0.976111
Target:  5'- gCCCCCCGGuc---GUCGGaCGCGGc-- -3'
miRNA:   3'- -GGGGGGCUuuuucUAGCC-GUGCCacu -5'
9095 3' -53.4 NC_002512.2 + 171982 0.67 0.982611
Target:  5'- uCCCgCCuuAGGAGGUgGGCG-GGUGAa -3'
miRNA:   3'- -GGGgGGcuUUUUCUAgCCGUgCCACU- -5'
9095 3' -53.4 NC_002512.2 + 164221 0.79 0.537375
Target:  5'- gCCgCCGGGAAGGGcaUCGGCAUGGUGu -3'
miRNA:   3'- gGGgGGCUUUUUCU--AGCCGUGCCACu -5'
9095 3' -53.4 NC_002512.2 + 158759 0.68 0.964892
Target:  5'- gCCgCCCUGcugcgcGAGAAGAUCcuGGCGCuGGUGGc -3'
miRNA:   3'- -GG-GGGGC------UUUUUCUAG--CCGUG-CCACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.