miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9095 3' -53.4 NC_002512.2 + 94835 0.66 0.993507
Target:  5'- gCCgCCgGAGGAAGAgcgUGGCcGCGGcGAg -3'
miRNA:   3'- -GGgGGgCUUUUUCUa--GCCG-UGCCaCU- -5'
9095 3' -53.4 NC_002512.2 + 172844 0.68 0.976111
Target:  5'- gCCCCCCGGuc---GUCGGaCGCGGc-- -3'
miRNA:   3'- -GGGGGGCUuuuucUAGCC-GUGCCacu -5'
9095 3' -53.4 NC_002512.2 + 187141 0.68 0.973331
Target:  5'- gCCCCUGuuccuGGGGUCGGggaggucCAUGGUGGa -3'
miRNA:   3'- gGGGGGCuuu--UUCUAGCC-------GUGCCACU- -5'
9095 3' -53.4 NC_002512.2 + 121313 1.11 0.007133
Target:  5'- gCCCCCCGAAAAAGAUCGGCACGGUGAc -3'
miRNA:   3'- -GGGGGGCUUUUUCUAGCCGUGCCACU- -5'
9095 3' -53.4 NC_002512.2 + 94081 0.66 0.991522
Target:  5'- uCCCCCCGcGAcGGcggCGGC-CGGUc- -3'
miRNA:   3'- -GGGGGGCuUUuUCua-GCCGuGCCAcu -5'
9095 3' -53.4 NC_002512.2 + 88909 0.66 0.990365
Target:  5'- gCCCCCCGAucc-GAUCGGuCACc---- -3'
miRNA:   3'- -GGGGGGCUuuuuCUAGCC-GUGccacu -5'
9095 3' -53.4 NC_002512.2 + 208444 0.67 0.984449
Target:  5'- gCCCCCGAucGAGucggacGUCGGgAUGGcgGAc -3'
miRNA:   3'- gGGGGGCUuuUUC------UAGCCgUGCCa-CU- -5'
9095 3' -53.4 NC_002512.2 + 97816 0.67 0.984449
Target:  5'- -aCUCCGggGAcgcggaguAGAgggCGGCGCGGggGAa -3'
miRNA:   3'- ggGGGGCuuUU--------UCUa--GCCGUGCCa-CU- -5'
9095 3' -53.4 NC_002512.2 + 131350 0.67 0.982611
Target:  5'- -aCgCCGGGcGAGGUcccagcCGGCGCGGUGGc -3'
miRNA:   3'- ggGgGGCUUuUUCUA------GCCGUGCCACU- -5'
9095 3' -53.4 NC_002512.2 + 146138 0.68 0.976111
Target:  5'- aCCUgCCGccGGAAGAUCGGCauGCGGa-- -3'
miRNA:   3'- -GGGgGGCu-UUUUCUAGCCG--UGCCacu -5'
9095 3' -53.4 NC_002512.2 + 216330 0.67 0.980613
Target:  5'- -gCCCCGAcgc-GGUCGGCGgcucgaucuUGGUGAa -3'
miRNA:   3'- ggGGGGCUuuuuCUAGCCGU---------GCCACU- -5'
9095 3' -53.4 NC_002512.2 + 206428 0.67 0.982611
Target:  5'- aUCUCCGugcguAGcgaCGGCGCGGUGAa -3'
miRNA:   3'- gGGGGGCuuuu-UCua-GCCGUGCCACU- -5'
9095 3' -53.4 NC_002512.2 + 72115 0.66 0.993507
Target:  5'- cCCCCCCGAAuuucauagacccGAAGAUCuGUACa---- -3'
miRNA:   3'- -GGGGGGCUU------------UUUCUAGcCGUGccacu -5'
9095 3' -53.4 NC_002512.2 + 88271 0.67 0.980613
Target:  5'- uCUCCCCGAAAucGAcCGcCACGGUc- -3'
miRNA:   3'- -GGGGGGCUUUuuCUaGCcGUGCCAcu -5'
9095 3' -53.4 NC_002512.2 + 4432 0.66 0.991522
Target:  5'- -gCCCUGAAAGuguUCGGUACGGa-- -3'
miRNA:   3'- ggGGGGCUUUUucuAGCCGUGCCacu -5'
9095 3' -53.4 NC_002512.2 + 153061 0.67 0.984272
Target:  5'- nUCCCCGGuc-GGGUCGGCggucgagGCGGcGAu -3'
miRNA:   3'- gGGGGGCUuuuUCUAGCCG-------UGCCaCU- -5'
9095 3' -53.4 NC_002512.2 + 118950 0.67 0.980404
Target:  5'- -gCCCCGGuguucuccaccGAGAGcgCGGCccuggugACGGUGGg -3'
miRNA:   3'- ggGGGGCU-----------UUUUCuaGCCG-------UGCCACU- -5'
9095 3' -53.4 NC_002512.2 + 143675 0.68 0.973331
Target:  5'- cCUCCCCGAAGccgggcgGGGuGUCgGGCACGGa-- -3'
miRNA:   3'- -GGGGGGCUUU-------UUC-UAG-CCGUGCCacu -5'
9095 3' -53.4 NC_002512.2 + 98554 0.66 0.991522
Target:  5'- uCUCCUCGcAGAGGGUCGG-ACGGccguUGAu -3'
miRNA:   3'- -GGGGGGCuUUUUCUAGCCgUGCC----ACU- -5'
9095 3' -53.4 NC_002512.2 + 87869 0.66 0.989612
Target:  5'- gCCCCCggccgCGGAAGAGA-CGGCcgccggaucgcccaaACGcGUGAg -3'
miRNA:   3'- -GGGGG-----GCUUUUUCUaGCCG---------------UGC-CACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.