miRNA display CGI


Results 1 - 20 of 249 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9095 5' -64.3 NC_002512.2 + 101937 0.65 0.703669
Target:  5'- aGGCGGCGGGcaaguccaaGCUGgUGGcccgcgggcccgcCGGCGGGc -3'
miRNA:   3'- -CCGCCGCCC---------CGGCaACCu------------GCCGCCUc -5'
9095 5' -64.3 NC_002512.2 + 128718 0.66 0.67049
Target:  5'- gGGCaGGUguGGaGGCUGggaGACGGCGGAc -3'
miRNA:   3'- -CCG-CCG--CC-CCGGCaacCUGCCGCCUc -5'
9095 5' -64.3 NC_002512.2 + 111074 0.66 0.698176
Target:  5'- cGCGGUcgccgaccacgacgGGGGCCcacagcucccgcccGGCGGCGGAGg -3'
miRNA:   3'- cCGCCG--------------CCCCGGcaac----------CUGCCGCCUC- -5'
9095 5' -64.3 NC_002512.2 + 14622 0.66 0.67049
Target:  5'- aGUGGCGGaGGCCGcgcuugaGGAaGGCGGc- -3'
miRNA:   3'- cCGCCGCC-CCGGCaa-----CCUgCCGCCuc -5'
9095 5' -64.3 NC_002512.2 + 63444 0.66 0.679754
Target:  5'- cGGCGcCGucGCCcccGgaGGACGGCGGGGa -3'
miRNA:   3'- -CCGCcGCccCGG---CaaCCUGCCGCCUC- -5'
9095 5' -64.3 NC_002512.2 + 89590 0.66 0.651892
Target:  5'- gGGUGGCGGGauGUCGcgGGAaCGuccGCGGGGc -3'
miRNA:   3'- -CCGCCGCCC--CGGCaaCCU-GC---CGCCUC- -5'
9095 5' -64.3 NC_002512.2 + 80416 0.66 0.698176
Target:  5'- uGGUGGCGuGGCUGUcGG-CGGCGu-- -3'
miRNA:   3'- -CCGCCGCcCCGGCAaCCuGCCGCcuc -5'
9095 5' -64.3 NC_002512.2 + 53316 0.66 0.67049
Target:  5'- -aCGGUGcuGGCCGUgaaccggcUGGugacgGCGGCGGAGa -3'
miRNA:   3'- ccGCCGCc-CCGGCA--------ACC-----UGCCGCCUC- -5'
9095 5' -64.3 NC_002512.2 + 5225 0.66 0.667706
Target:  5'- cGGCGGCGggaaagucgaacucGGGCgCGUaGGccgaggccGCGGCGGcGa -3'
miRNA:   3'- -CCGCCGC--------------CCCG-GCAaCC--------UGCCGCCuC- -5'
9095 5' -64.3 NC_002512.2 + 118215 0.66 0.688985
Target:  5'- uGGUGcGaCGGGGCCcucGUgcucggGGACGGCaccguccuGGAGc -3'
miRNA:   3'- -CCGC-C-GCCCCGG---CAa-----CCUGCCG--------CCUC- -5'
9095 5' -64.3 NC_002512.2 + 104888 0.66 0.67049
Target:  5'- cGGCGcGaCGGGGCCGgguccagGGACagguuGGCGaAGu -3'
miRNA:   3'- -CCGC-C-GCCCCGGCaa-----CCUG-----CCGCcUC- -5'
9095 5' -64.3 NC_002512.2 + 119100 0.66 0.651892
Target:  5'- cGGCggaccuGGUGGGcGUCGUguaccGGCGGCGGGa -3'
miRNA:   3'- -CCG------CCGCCC-CGGCAac---CUGCCGCCUc -5'
9095 5' -64.3 NC_002512.2 + 4414 0.66 0.661201
Target:  5'- cGCGGUcgacGGcGGCUGcUGGuagacCGGCGGGGu -3'
miRNA:   3'- cCGCCG----CC-CCGGCaACCu----GCCGCCUC- -5'
9095 5' -64.3 NC_002512.2 + 81281 0.66 0.661201
Target:  5'- cGGCaGgGGGGCgGUccGGGCcuGCGGGGu -3'
miRNA:   3'- -CCGcCgCCCCGgCAa-CCUGc-CGCCUC- -5'
9095 5' -64.3 NC_002512.2 + 80831 0.66 0.696341
Target:  5'- cGGCGGaGGGGCCccGUaggcgagccucgGGACG-CGGGGc -3'
miRNA:   3'- -CCGCCgCCCCGG--CAa-----------CCUGCcGCCUC- -5'
9095 5' -64.3 NC_002512.2 + 78551 0.66 0.651892
Target:  5'- uGGCgccGGCcGGGCCGcgaGGGCGGaUGGAa -3'
miRNA:   3'- -CCG---CCGcCCCGGCaa-CCUGCC-GCCUc -5'
9095 5' -64.3 NC_002512.2 + 21061 0.66 0.67049
Target:  5'- cGGCGcGUGaGGGCgcacGGGCGGCGGu- -3'
miRNA:   3'- -CCGC-CGC-CCCGgcaaCCUGCCGCCuc -5'
9095 5' -64.3 NC_002512.2 + 93603 0.66 0.651892
Target:  5'- cGUGGuCGGGgaagaacgGCCGUUGGACGGgcgcgugcuCGGuGg -3'
miRNA:   3'- cCGCC-GCCC--------CGGCAACCUGCC---------GCCuC- -5'
9095 5' -64.3 NC_002512.2 + 45459 0.66 0.698176
Target:  5'- cGcCGGCGGcGGCCGa--GGCGaCGGAGa -3'
miRNA:   3'- cC-GCCGCC-CCGGCaacCUGCcGCCUC- -5'
9095 5' -64.3 NC_002512.2 + 228021 0.66 0.698176
Target:  5'- cGCGGgacgaGGGGCgaccGGACGGCGGcGa -3'
miRNA:   3'- cCGCCg----CCCCGgcaaCCUGCCGCCuC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.