miRNA display CGI


Results 1 - 20 of 249 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9095 5' -64.3 NC_002512.2 + 136183 0.73 0.304901
Target:  5'- cGCGGCGGGGUCGccgGGAucgcgucgacgcCGGCGGc- -3'
miRNA:   3'- cCGCCGCCCCGGCaa-CCU------------GCCGCCuc -5'
9095 5' -64.3 NC_002512.2 + 81986 0.74 0.245898
Target:  5'- uGGCGGCGGGGgCGUcucggGGGCGGuCGcGGc -3'
miRNA:   3'- -CCGCCGCCCCgGCAa----CCUGCC-GC-CUc -5'
9095 5' -64.3 NC_002512.2 + 3076 0.74 0.251345
Target:  5'- cGGCGGCGGcGGCCacgGcGGCGGCcGAGa -3'
miRNA:   3'- -CCGCCGCC-CCGGcaaC-CUGCCGcCUC- -5'
9095 5' -64.3 NC_002512.2 + 11451 0.74 0.251345
Target:  5'- cGCGGacgGGGGCCGg-GGAaggGGCGGAGa -3'
miRNA:   3'- cCGCCg--CCCCGGCaaCCUg--CCGCCUC- -5'
9095 5' -64.3 NC_002512.2 + 93 0.74 0.28008
Target:  5'- aGGCGGCGGggggagaggaGGCCGgcagGaGGCGGCaGAGg -3'
miRNA:   3'- -CCGCCGCC----------CCGGCaa--C-CUGCCGcCUC- -5'
9095 5' -64.3 NC_002512.2 + 229497 0.74 0.28008
Target:  5'- aGGCGGCGGggggagaggaGGCCGgcagGaGGCGGCaGAGg -3'
miRNA:   3'- -CCGCCGCC----------CCGGCaa--C-CUGCCGcCUC- -5'
9095 5' -64.3 NC_002512.2 + 131034 0.73 0.286131
Target:  5'- gGGCGuCGGGGCCGcgggggaGGACGGCgccgcgccGGAGg -3'
miRNA:   3'- -CCGCcGCCCCGGCaa-----CCUGCCG--------CCUC- -5'
9095 5' -64.3 NC_002512.2 + 47018 0.73 0.292284
Target:  5'- uGGCGGCGGaGCUGcUGGGCGaGCuGAGg -3'
miRNA:   3'- -CCGCCGCCcCGGCaACCUGC-CGcCUC- -5'
9095 5' -64.3 NC_002512.2 + 122004 0.73 0.298541
Target:  5'- cGGCGcccggaGGGGCCGgaGG-CGGCGGAu -3'
miRNA:   3'- -CCGCcg----CCCCGGCaaCCuGCCGCCUc -5'
9095 5' -64.3 NC_002512.2 + 115880 0.75 0.235298
Target:  5'- cGCuGCGGGGCCGac-GGCGGCGGGa -3'
miRNA:   3'- cCGcCGCCCCGGCaacCUGCCGCCUc -5'
9095 5' -64.3 NC_002512.2 + 4552 0.75 0.235298
Target:  5'- aGGCGGCGcgaccgacGGCUGcggcgucugGGGCGGCGGAGg -3'
miRNA:   3'- -CCGCCGCc-------CCGGCaa-------CCUGCCGCCUC- -5'
9095 5' -64.3 NC_002512.2 + 35273 0.75 0.230143
Target:  5'- cGCGGCGacGGCCGc--GGCGGCGGAGg -3'
miRNA:   3'- cCGCCGCc-CCGGCaacCUGCCGCCUC- -5'
9095 5' -64.3 NC_002512.2 + 155383 0.81 0.092692
Target:  5'- gGGCGGCGGcGCCGgcGGGCGaucGCGGAGg -3'
miRNA:   3'- -CCGCCGCCcCGGCaaCCUGC---CGCCUC- -5'
9095 5' -64.3 NC_002512.2 + 120631 0.8 0.114767
Target:  5'- aGGCGGCGGGacgggacGCCGggGGcGCGGaCGGAGa -3'
miRNA:   3'- -CCGCCGCCC-------CGGCaaCC-UGCC-GCCUC- -5'
9095 5' -64.3 NC_002512.2 + 82342 0.78 0.139039
Target:  5'- cGGCGgguaGCGGuGGgCGUgcggGGGCGGCGGAGg -3'
miRNA:   3'- -CCGC----CGCC-CCgGCAa---CCUGCCGCCUC- -5'
9095 5' -64.3 NC_002512.2 + 120782 0.78 0.156289
Target:  5'- cGGCcgucGGCGGGGgCGgcgGGACGGCGGcGg -3'
miRNA:   3'- -CCG----CCGCCCCgGCaa-CCUGCCGCCuC- -5'
9095 5' -64.3 NC_002512.2 + 5856 0.76 0.206249
Target:  5'- cGGCGGCcccgucggagucccGGGcGUCGUccgacucgucgcucgUGGACGGCGGGGc -3'
miRNA:   3'- -CCGCCG--------------CCC-CGGCA---------------ACCUGCCGCCUC- -5'
9095 5' -64.3 NC_002512.2 + 82391 0.76 0.209056
Target:  5'- cGGCGGUggcuccgcgcgcggGGGaGCCGgUGGucccGCGGCGGAGg -3'
miRNA:   3'- -CCGCCG--------------CCC-CGGCaACC----UGCCGCCUC- -5'
9095 5' -64.3 NC_002512.2 + 6345 0.76 0.210471
Target:  5'- gGGC-GCGGGGCCGgcGGGCcGCGGGc -3'
miRNA:   3'- -CCGcCGCCCCGGCaaCCUGcCGCCUc -5'
9095 5' -64.3 NC_002512.2 + 128680 0.76 0.210471
Target:  5'- cGGCGGaCGGGGCCGUcGuGAuCGGCaaGGGGu -3'
miRNA:   3'- -CCGCC-GCCCCGGCAaC-CU-GCCG--CCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.