miRNA display CGI


Results 1 - 20 of 249 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9095 5' -64.3 NC_002512.2 + 121348 1.1 0.000869
Target:  5'- cGGCGGCGGGGCCGUUGGACGGCGGAGa -3'
miRNA:   3'- -CCGCCGCCCCGGCAACCUGCCGCCUC- -5'
9095 5' -64.3 NC_002512.2 + 156517 0.85 0.052835
Target:  5'- gGGCGGCGGGGCgCGggGGuccgGCGGCGGGa -3'
miRNA:   3'- -CCGCCGCCCCG-GCaaCC----UGCCGCCUc -5'
9095 5' -64.3 NC_002512.2 + 157140 0.82 0.080148
Target:  5'- cGGCGGCGGGcCCGgggcGGGCGGCGGGc -3'
miRNA:   3'- -CCGCCGCCCcGGCaa--CCUGCCGCCUc -5'
9095 5' -64.3 NC_002512.2 + 202511 0.82 0.084137
Target:  5'- cGGCGGCGGaGGCgGagGcGGCGGCGGGGg -3'
miRNA:   3'- -CCGCCGCC-CCGgCaaC-CUGCCGCCUC- -5'
9095 5' -64.3 NC_002512.2 + 116892 0.81 0.087042
Target:  5'- uGGCGGCGGGGCCGgggcgggcuccucGGACGGCGu-- -3'
miRNA:   3'- -CCGCCGCCCCGGCaa-----------CCUGCCGCcuc -5'
9095 5' -64.3 NC_002512.2 + 184548 0.81 0.088316
Target:  5'- cGGCGGCGcGGGCCGgcGGACGGCc--- -3'
miRNA:   3'- -CCGCCGC-CCCGGCaaCCUGCCGccuc -5'
9095 5' -64.3 NC_002512.2 + 155383 0.81 0.092692
Target:  5'- gGGCGGCGGcGCCGgcGGGCGaucGCGGAGg -3'
miRNA:   3'- -CCGCCGCCcCGGCaaCCUGC---CGCCUC- -5'
9095 5' -64.3 NC_002512.2 + 168138 0.81 0.094956
Target:  5'- cGCGGCgaGGGGCUGggggUGGGgGGCGGAGa -3'
miRNA:   3'- cCGCCG--CCCCGGCa---ACCUgCCGCCUC- -5'
9095 5' -64.3 NC_002512.2 + 94663 0.8 0.112061
Target:  5'- aGGCGGCccGGGGCCGggGGGCcccccggcccgcuGGCGGAc -3'
miRNA:   3'- -CCGCCG--CCCCGGCaaCCUG-------------CCGCCUc -5'
9095 5' -64.3 NC_002512.2 + 191291 0.8 0.112329
Target:  5'- gGGCGGCGGGG-CGggGGACGGgGGccGGg -3'
miRNA:   3'- -CCGCCGCCCCgGCaaCCUGCCgCC--UC- -5'
9095 5' -64.3 NC_002512.2 + 120631 0.8 0.114767
Target:  5'- aGGCGGCGGGacgggacGCCGggGGcGCGGaCGGAGa -3'
miRNA:   3'- -CCGCCGCCC-------CGGCaaCC-UGCC-GCCUC- -5'
9095 5' -64.3 NC_002512.2 + 156460 0.79 0.120651
Target:  5'- gGGCGGCGGGGgacUCGg-GGGCGGCGGGc -3'
miRNA:   3'- -CCGCCGCCCC---GGCaaCCUGCCGCCUc -5'
9095 5' -64.3 NC_002512.2 + 82342 0.78 0.139039
Target:  5'- cGGCGgguaGCGGuGGgCGUgcggGGGCGGCGGAGg -3'
miRNA:   3'- -CCGC----CGCC-CCgGCAa---CCUGCCGCCUC- -5'
9095 5' -64.3 NC_002512.2 + 120782 0.78 0.156289
Target:  5'- cGGCcgucGGCGGGGgCGgcgGGACGGCGGcGg -3'
miRNA:   3'- -CCG----CCGCCCCgGCaa-CCUGCCGCCuC- -5'
9095 5' -64.3 NC_002512.2 + 5856 0.76 0.206249
Target:  5'- cGGCGGCcccgucggagucccGGGcGUCGUccgacucgucgcucgUGGACGGCGGGGc -3'
miRNA:   3'- -CCGCCG--------------CCC-CGGCA---------------ACCUGCCGCCUC- -5'
9095 5' -64.3 NC_002512.2 + 82391 0.76 0.209056
Target:  5'- cGGCGGUggcuccgcgcgcggGGGaGCCGgUGGucccGCGGCGGAGg -3'
miRNA:   3'- -CCGCCG--------------CCC-CGGCaACC----UGCCGCCUC- -5'
9095 5' -64.3 NC_002512.2 + 128680 0.76 0.210471
Target:  5'- cGGCGGaCGGGGCCGUcGuGAuCGGCaaGGGGu -3'
miRNA:   3'- -CCGCC-GCCCCGGCAaC-CU-GCCG--CCUC- -5'
9095 5' -64.3 NC_002512.2 + 6345 0.76 0.210471
Target:  5'- gGGC-GCGGGGCCGgcGGGCcGCGGGc -3'
miRNA:   3'- -CCGcCGCCCCGGCaaCCUGcCGCCUc -5'
9095 5' -64.3 NC_002512.2 + 173635 0.75 0.225084
Target:  5'- cGGCGGCGaaccccGGGUCGg-GGGCGGCGGcAGc -3'
miRNA:   3'- -CCGCCGC------CCCGGCaaCCUGCCGCC-UC- -5'
9095 5' -64.3 NC_002512.2 + 35273 0.75 0.230143
Target:  5'- cGCGGCGacGGCCGc--GGCGGCGGAGg -3'
miRNA:   3'- cCGCCGCc-CCGGCaacCUGCCGCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.