miRNA display CGI


Results 1 - 20 of 249 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9095 5' -64.3 NC_002512.2 + 93 0.74 0.28008
Target:  5'- aGGCGGCGGggggagaggaGGCCGgcagGaGGCGGCaGAGg -3'
miRNA:   3'- -CCGCCGCC----------CCGGCaa--C-CUGCCGcCUC- -5'
9095 5' -64.3 NC_002512.2 + 103 0.7 0.453377
Target:  5'- gGGCGG-GuGGGCgGa--GGCGGCGGAGa -3'
miRNA:   3'- -CCGCCgC-CCCGgCaacCUGCCGCCUC- -5'
9095 5' -64.3 NC_002512.2 + 170 0.67 0.586704
Target:  5'- aGGCGGCagaGGaGGCCGgaGGGC-GUGGGc -3'
miRNA:   3'- -CCGCCG---CC-CCGGCaaCCUGcCGCCUc -5'
9095 5' -64.3 NC_002512.2 + 208 0.68 0.531802
Target:  5'- gGGCGgagagggaGCGGGGaCCGaaGGGCaGGCGGGc -3'
miRNA:   3'- -CCGC--------CGCCCC-GGCaaCCUG-CCGCCUc -5'
9095 5' -64.3 NC_002512.2 + 2302 0.69 0.478864
Target:  5'- gGGUGGCGGGGCUcuGcUGcGcCGGCGGu- -3'
miRNA:   3'- -CCGCCGCCCCGG--CaAC-CuGCCGCCuc -5'
9095 5' -64.3 NC_002512.2 + 2822 0.69 0.478864
Target:  5'- cGGCgcgGGCGcGGGcCCGgacGACGGCGGGc -3'
miRNA:   3'- -CCG---CCGC-CCC-GGCaacCUGCCGCCUc -5'
9095 5' -64.3 NC_002512.2 + 3076 0.74 0.251345
Target:  5'- cGGCGGCGGcGGCCacgGcGGCGGCcGAGa -3'
miRNA:   3'- -CCGCCGCC-CCGGcaaC-CUGCCGcCUC- -5'
9095 5' -64.3 NC_002512.2 + 3374 0.72 0.331376
Target:  5'- cGGCGGCaGGGCCGccagcaGGacccGCGGCGaGGGg -3'
miRNA:   3'- -CCGCCGcCCCGGCaa----CC----UGCCGC-CUC- -5'
9095 5' -64.3 NC_002512.2 + 4414 0.66 0.661201
Target:  5'- cGCGGUcgacGGcGGCUGcUGGuagacCGGCGGGGu -3'
miRNA:   3'- cCGCCG----CC-CCGGCaACCu----GCCGCCUC- -5'
9095 5' -64.3 NC_002512.2 + 4552 0.75 0.235298
Target:  5'- aGGCGGCGcgaccgacGGCUGcggcgucugGGGCGGCGGAGg -3'
miRNA:   3'- -CCGCCGCc-------CCGGCaa-------CCUGCCGCCUC- -5'
9095 5' -64.3 NC_002512.2 + 4594 0.7 0.418178
Target:  5'- aGGCGGCGccgcGGGCCGcgagacggacgccgaGGACgcccuccuGGCGGAGa -3'
miRNA:   3'- -CCGCCGC----CCCGGCaa-------------CCUG--------CCGCCUC- -5'
9095 5' -64.3 NC_002512.2 + 4667 0.73 0.298541
Target:  5'- cGGCGGCGuuGGGCCuGUUGG-CGuugaccaucGCGGGGg -3'
miRNA:   3'- -CCGCCGC--CCCGG-CAACCuGC---------CGCCUC- -5'
9095 5' -64.3 NC_002512.2 + 5177 0.67 0.605275
Target:  5'- gGGCGGCGGccGGCCccagcaGGGCGGgcaGGAc -3'
miRNA:   3'- -CCGCCGCC--CCGGcaa---CCUGCCg--CCUc -5'
9095 5' -64.3 NC_002512.2 + 5225 0.66 0.667706
Target:  5'- cGGCGGCGggaaagucgaacucGGGCgCGUaGGccgaggccGCGGCGGcGa -3'
miRNA:   3'- -CCGCCGC--------------CCCG-GCAaCC--------UGCCGCCuC- -5'
9095 5' -64.3 NC_002512.2 + 5856 0.76 0.206249
Target:  5'- cGGCGGCcccgucggagucccGGGcGUCGUccgacucgucgcucgUGGACGGCGGGGc -3'
miRNA:   3'- -CCGCCG--------------CCC-CGGCA---------------ACCUGCCGCCUC- -5'
9095 5' -64.3 NC_002512.2 + 6345 0.76 0.210471
Target:  5'- gGGC-GCGGGGCCGgcGGGCcGCGGGc -3'
miRNA:   3'- -CCGcCGCCCCGGCaaCCUGcCGCCUc -5'
9095 5' -64.3 NC_002512.2 + 6413 0.68 0.549929
Target:  5'- cGGCGGCGGcGCUGg-GGAaGGCGGc- -3'
miRNA:   3'- -CCGCCGCCcCGGCaaCCUgCCGCCuc -5'
9095 5' -64.3 NC_002512.2 + 7319 0.67 0.614588
Target:  5'- -aCGGC-GGGCCGcggcgGGACGGuCGGGu -3'
miRNA:   3'- ccGCCGcCCCGGCaa---CCUGCC-GCCUc -5'
9095 5' -64.3 NC_002512.2 + 7752 0.67 0.586704
Target:  5'- gGGCGGagcCGGGGCgGUagucGGCcGCGGAGa -3'
miRNA:   3'- -CCGCC---GCCCCGgCAac--CUGcCGCCUC- -5'
9095 5' -64.3 NC_002512.2 + 9324 0.69 0.487516
Target:  5'- gGGCGGCGcacGGCCaGguaGACGGCGGuGa -3'
miRNA:   3'- -CCGCCGCc--CCGG-CaacCUGCCGCCuC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.