miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9112 5' -51.4 NC_002512.2 + 228231 0.67 0.990327
Target:  5'- -gAGACGgcgGGAAGGGcGaacGUGCCGGAc -3'
miRNA:   3'- caUCUGCa--UCUUCUC-Caa-CGCGGUCU- -5'
9112 5' -51.4 NC_002512.2 + 227943 0.66 0.995877
Target:  5'- -cGGACG-AGgcGGGGgaGCGCgGGGg -3'
miRNA:   3'- caUCUGCaUCuuCUCCaaCGCGgUCU- -5'
9112 5' -51.4 NC_002512.2 + 227275 0.7 0.963813
Target:  5'- -aGGACGgcggagaacagcaccAGGAGGGGgaGCGCCAGc -3'
miRNA:   3'- caUCUGCa--------------UCUUCUCCaaCGCGGUCu -5'
9112 5' -51.4 NC_002512.2 + 221610 0.69 0.96984
Target:  5'- gGUGGACGgcGAGGAGGgaGCGgguCCAc- -3'
miRNA:   3'- -CAUCUGCauCUUCUCCaaCGC---GGUcu -5'
9112 5' -51.4 NC_002512.2 + 221280 0.71 0.938932
Target:  5'- -gGGcGCGUGGAGGGGGggGagGCCGGGg -3'
miRNA:   3'- caUC-UGCAUCUUCUCCaaCg-CGGUCU- -5'
9112 5' -51.4 NC_002512.2 + 219693 0.69 0.980122
Target:  5'- -aGGACGaGGAGGAGcGUcgGCGCuCGGGg -3'
miRNA:   3'- caUCUGCaUCUUCUC-CAa-CGCG-GUCU- -5'
9112 5' -51.4 NC_002512.2 + 211774 0.67 0.99357
Target:  5'- -aGGACGUGGAGGcccGGGUgGcCGCgGGGg -3'
miRNA:   3'- caUCUGCAUCUUC---UCCAaC-GCGgUCU- -5'
9112 5' -51.4 NC_002512.2 + 209284 0.65 0.997742
Target:  5'- -aGGACGUGGAgcgcugcgucaaggAGAacGGcgGCGUCAGGg -3'
miRNA:   3'- caUCUGCAUCU--------------UCU--CCaaCGCGGUCU- -5'
9112 5' -51.4 NC_002512.2 + 195723 0.66 0.996475
Target:  5'- --cGACGUGGAAGGGGa---GCgGGAa -3'
miRNA:   3'- cauCUGCAUCUUCUCCaacgCGgUCU- -5'
9112 5' -51.4 NC_002512.2 + 191458 0.68 0.98843
Target:  5'- -gGGGCGUuGAGGuGGgccgaguacgagGCGCCGGAc -3'
miRNA:   3'- caUCUGCAuCUUCuCCaa----------CGCGGUCU- -5'
9112 5' -51.4 NC_002512.2 + 191091 0.72 0.892735
Target:  5'- aGUGGGgGUGGAugguGGGUUGCuGCCGGGg -3'
miRNA:   3'- -CAUCUgCAUCUuc--UCCAACG-CGGUCU- -5'
9112 5' -51.4 NC_002512.2 + 187020 0.67 0.991526
Target:  5'- -cGGGCGUGGAGGAGGagGaCGaggaCCGGGc -3'
miRNA:   3'- caUCUGCAUCUUCUCCaaC-GC----GGUCU- -5'
9112 5' -51.4 NC_002512.2 + 169797 0.66 0.997457
Target:  5'- --cGGCGUGGGAGGGGUcugaucugUGgGUgGGGg -3'
miRNA:   3'- cauCUGCAUCUUCUCCA--------ACgCGgUCU- -5'
9112 5' -51.4 NC_002512.2 + 169345 0.68 0.987534
Target:  5'- -cGGACGUGGGAGGGGacuggcaugUGgGUgGGAg -3'
miRNA:   3'- caUCUGCAUCUUCUCCa--------ACgCGgUCU- -5'
9112 5' -51.4 NC_002512.2 + 166208 0.69 0.972707
Target:  5'- uUGGGCGgcGAGGAGGgccgcgcGCGCguGGg -3'
miRNA:   3'- cAUCUGCauCUUCUCCaa-----CGCGguCU- -5'
9112 5' -51.4 NC_002512.2 + 149359 0.67 0.991526
Target:  5'- -aGGACGacggGGGAGAGGacgaggGCGCgGGGa -3'
miRNA:   3'- caUCUGCa---UCUUCUCCaa----CGCGgUCU- -5'
9112 5' -51.4 NC_002512.2 + 145782 0.71 0.92343
Target:  5'- uGUGGcCGcgGGAGGAGGUggagGCccGCCAGAa -3'
miRNA:   3'- -CAUCuGCa-UCUUCUCCAa---CG--CGGUCU- -5'
9112 5' -51.4 NC_002512.2 + 137054 0.69 0.96984
Target:  5'- -gGGACGgccagGGAGGAGGcgccGCGCCcgGGAa -3'
miRNA:   3'- caUCUGCa----UCUUCUCCaa--CGCGG--UCU- -5'
9112 5' -51.4 NC_002512.2 + 133790 0.69 0.975371
Target:  5'- cGgcGGCGgcGggGAcgacGGUcGCGCCGGGu -3'
miRNA:   3'- -CauCUGCauCuuCU----CCAaCGCGGUCU- -5'
9112 5' -51.4 NC_002512.2 + 131975 0.67 0.991526
Target:  5'- gGUAGGCGaAGAAcGAGGUcGCGUgGGc -3'
miRNA:   3'- -CAUCUGCaUCUU-CUCCAaCGCGgUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.