miRNA display CGI


Results 21 - 40 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9117 5' -55 NC_002512.2 + 219840 0.69 0.919557
Target:  5'- uCGggGGGuCCGGcccgggggcGGAUCG-CGGACGGg -3'
miRNA:   3'- -GCuuCCU-GGCC---------CCUAGCaGCUUGCUg -5'
9117 5' -55 NC_002512.2 + 218590 0.67 0.966102
Target:  5'- uCGGAGGucuccCCGGGGucUCGcccgcggacUCGAAgGACg -3'
miRNA:   3'- -GCUUCCu----GGCCCCu-AGC---------AGCUUgCUG- -5'
9117 5' -55 NC_002512.2 + 217942 0.72 0.797676
Target:  5'- -uGGGGACCGGGG--CGggGAACGACu -3'
miRNA:   3'- gcUUCCUGGCCCCuaGCagCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 217885 0.71 0.846902
Target:  5'- cCGA--GAUCGGcGGccgcGUCGUCGAGCGGCg -3'
miRNA:   3'- -GCUucCUGGCC-CC----UAGCAGCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 217800 0.65 0.984911
Target:  5'- uGgcGGAUCGGcGucgccgucccGAUCGUCG-ACGGCg -3'
miRNA:   3'- gCuuCCUGGCC-C----------CUAGCAGCuUGCUG- -5'
9117 5' -55 NC_002512.2 + 217588 0.72 0.788943
Target:  5'- cCGgcGGcGCCgccucGGGGGUCGUCG-GCGACu -3'
miRNA:   3'- -GCuuCC-UGG-----CCCCUAGCAGCuUGCUG- -5'
9117 5' -55 NC_002512.2 + 215085 0.66 0.981219
Target:  5'- uCGGcGGGACCGaGGAcuUCGUCGccgccGCGGCc -3'
miRNA:   3'- -GCU-UCCUGGCcCCU--AGCAGCu----UGCUG- -5'
9117 5' -55 NC_002512.2 + 212518 0.69 0.93196
Target:  5'- ---cGGACCacgauccgauguucGGGAUCGUCGAcggggACGACg -3'
miRNA:   3'- gcuuCCUGGc-------------CCCUAGCAGCU-----UGCUG- -5'
9117 5' -55 NC_002512.2 + 211889 0.69 0.924358
Target:  5'- gGAgcGGGucaccuuCCGGGGcugccgcGUCGUCGAGCGuCg -3'
miRNA:   3'- gCU--UCCu------GGCCCC-------UAGCAGCUUGCuG- -5'
9117 5' -55 NC_002512.2 + 205749 0.68 0.939519
Target:  5'- aGGuAGGGCCGGGG--UGUCGcGCGcACg -3'
miRNA:   3'- gCU-UCCUGGCCCCuaGCAGCuUGC-UG- -5'
9117 5' -55 NC_002512.2 + 205217 0.7 0.883027
Target:  5'- cCGAGcGGcCCGGGacggaGAUCGggaCGGACGACg -3'
miRNA:   3'- -GCUU-CCuGGCCC-----CUAGCa--GCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 204632 0.68 0.939519
Target:  5'- aCGAAGGGgaCGGGGAcCG--GGACGGCg -3'
miRNA:   3'- -GCUUCCUg-GCCCCUaGCagCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 201685 0.66 0.976889
Target:  5'- gCGAGGGcgGCCGcgucuggugcGGGAUCGgCG-GCGGCg -3'
miRNA:   3'- -GCUUCC--UGGC----------CCCUAGCaGCuUGCUG- -5'
9117 5' -55 NC_002512.2 + 200424 0.67 0.966102
Target:  5'- aGGAGGACgaggagaaGGGGUCGUCGuAGCG-Ca -3'
miRNA:   3'- gCUUCCUGgc------CCCUAGCAGC-UUGCuG- -5'
9117 5' -55 NC_002512.2 + 200294 0.74 0.676243
Target:  5'- cCGucGGACUGGGGcUCGUCcgcccucgggGAGCGGCu -3'
miRNA:   3'- -GCuuCCUGGCCCCuAGCAG----------CUUGCUG- -5'
9117 5' -55 NC_002512.2 + 199495 0.73 0.752779
Target:  5'- cCGucAGGGCCGcGaGGAucaggucgaggUCGUCGGGCGACa -3'
miRNA:   3'- -GCu-UCCUGGC-C-CCU-----------AGCAGCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 198681 0.69 0.919557
Target:  5'- aCGggGGGCCcgaagucgGGGGGUUcuUCGGACGuCg -3'
miRNA:   3'- -GCuuCCUGG--------CCCCUAGc-AGCUUGCuG- -5'
9117 5' -55 NC_002512.2 + 195221 0.67 0.959553
Target:  5'- uGAGGGacgGCCGGaGGUUGacuUUGAACGACg -3'
miRNA:   3'- gCUUCC---UGGCCcCUAGC---AGCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 194836 0.73 0.743471
Target:  5'- uCGAcaGACCGGGGAUCGUguUGAACaACg -3'
miRNA:   3'- -GCUucCUGGCCCCUAGCA--GCUUGcUG- -5'
9117 5' -55 NC_002512.2 + 194023 0.67 0.96908
Target:  5'- gCGAuGGACCGGGaGUCGgCGAuccaGGCc -3'
miRNA:   3'- -GCUuCCUGGCCCcUAGCaGCUug--CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.