Results 41 - 60 of 184 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9117 | 5' | -55 | NC_002512.2 | + | 221294 | 0.68 | 0.952181 |
Target: 5'- gGggGaGGCCGGGGucggCGggGAGCGGg -3' miRNA: 3'- gCuuC-CUGGCCCCua--GCagCUUGCUg -5' |
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9117 | 5' | -55 | NC_002512.2 | + | 135026 | 0.66 | 0.974467 |
Target: 5'- aCGAcgccAGGAUCGGGGGccCGUCuGACG-Cg -3' miRNA: 3'- -GCU----UCCUGGCCCCUa-GCAGcUUGCuG- -5' |
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9117 | 5' | -55 | NC_002512.2 | + | 221441 | 0.65 | 0.984911 |
Target: 5'- gCGGAccGcGGCCGGGGcgCGgUCGucCGACc -3' miRNA: 3'- -GCUU--C-CUGGCCCCuaGC-AGCuuGCUG- -5' |
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9117 | 5' | -55 | NC_002512.2 | + | 226688 | 0.68 | 0.952181 |
Target: 5'- gCGccGGGCCGucgcccgcGGcGG-CGUCGAGCGACg -3' miRNA: 3'- -GCuuCCUGGC--------CC-CUaGCAGCUUGCUG- -5' |
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9117 | 5' | -55 | NC_002512.2 | + | 140991 | 0.65 | 0.984911 |
Target: 5'- cCGAAcGGACCGc-GAUCG-CGAAgGACg -3' miRNA: 3'- -GCUU-CCUGGCccCUAGCaGCUUgCUG- -5' |
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9117 | 5' | -55 | NC_002512.2 | + | 166218 | 0.69 | 0.908248 |
Target: 5'- aGGAGGGCCgcgcgcgcguGGGGAaguacugCGUCcaGGACGGCg -3' miRNA: 3'- gCUUCCUGG----------CCCCUa------GCAG--CUUGCUG- -5' |
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9117 | 5' | -55 | NC_002512.2 | + | 161500 | 0.66 | 0.983141 |
Target: 5'- aGGAGGACCuGGuGcgCugcgCGGACGGCa -3' miRNA: 3'- gCUUCCUGGcCC-CuaGca--GCUUGCUG- -5' |
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9117 | 5' | -55 | NC_002512.2 | + | 193570 | 0.69 | 0.908248 |
Target: 5'- gGGAGGGgUGGGGAUC-UCauccuccgcggGGACGACa -3' miRNA: 3'- gCUUCCUgGCCCCUAGcAG-----------CUUGCUG- -5' |
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9117 | 5' | -55 | NC_002512.2 | + | 219840 | 0.69 | 0.919557 |
Target: 5'- uCGggGGGuCCGGcccgggggcGGAUCG-CGGACGGg -3' miRNA: 3'- -GCuuCCU-GGCC---------CCUAGCaGCUUGCUg -5' |
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9117 | 5' | -55 | NC_002512.2 | + | 160719 | 0.69 | 0.929981 |
Target: 5'- gGggGGACauCGGGGGggauuUCGggggGAACGGCg -3' miRNA: 3'- gCuuCCUG--GCCCCU-----AGCag--CUUGCUG- -5' |
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9117 | 5' | -55 | NC_002512.2 | + | 150039 | 0.68 | 0.934861 |
Target: 5'- aCGAgGGGGCCGGGGA-CGaCgGGGCGGg -3' miRNA: 3'- -GCU-UCCUGGCCCCUaGCaG-CUUGCUg -5' |
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9117 | 5' | -55 | NC_002512.2 | + | 91802 | 0.68 | 0.939519 |
Target: 5'- uGGAGGACuCGGuGGGUCGUUccugcaGGACcuGACg -3' miRNA: 3'- gCUUCCUG-GCC-CCUAGCAG------CUUG--CUG- -5' |
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9117 | 5' | -55 | NC_002512.2 | + | 123557 | 0.68 | 0.948177 |
Target: 5'- aCGAGcGACCGGGGAgagcCGcCGAA-GGCg -3' miRNA: 3'- -GCUUcCUGGCCCCUa---GCaGCUUgCUG- -5' |
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9117 | 5' | -55 | NC_002512.2 | + | 156029 | 0.67 | 0.9626 |
Target: 5'- aCGuccuGGGGCCaGugcaugcGGGUCGUCGAcACGGCg -3' miRNA: 3'- -GCu---UCCUGGcC-------CCUAGCAGCU-UGCUG- -5' |
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9117 | 5' | -55 | NC_002512.2 | + | 200424 | 0.67 | 0.966102 |
Target: 5'- aGGAGGACgaggagaaGGGGUCGUCGuAGCG-Ca -3' miRNA: 3'- gCUUCCUGgc------CCCUAGCAGC-UUGCuG- -5' |
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9117 | 5' | -55 | NC_002512.2 | + | 194023 | 0.67 | 0.96908 |
Target: 5'- gCGAuGGACCGGGaGUCGgCGAuccaGGCc -3' miRNA: 3'- -GCUuCCUGGCCCcUAGCaGCUug--CUG- -5' |
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9117 | 5' | -55 | NC_002512.2 | + | 100490 | 0.66 | 0.974467 |
Target: 5'- ---cGGACCuuGGGGAggccgcggUCGUCGAGCa-- -3' miRNA: 3'- gcuuCCUGG--CCCCU--------AGCAGCUUGcug -5' |
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9117 | 5' | -55 | NC_002512.2 | + | 39548 | 0.66 | 0.979137 |
Target: 5'- uGAAGGACgCGGGacggugccaaGggCGgcgaCGGGCGACa -3' miRNA: 3'- gCUUCCUG-GCCC----------CuaGCa---GCUUGCUG- -5' |
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9117 | 5' | -55 | NC_002512.2 | + | 136440 | 0.66 | 0.980406 |
Target: 5'- aCGAGGGGacCCGGGGccacuacauccgCGcCGAguACGACg -3' miRNA: 3'- -GCUUCCU--GGCCCCua----------GCaGCU--UGCUG- -5' |
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9117 | 5' | -55 | NC_002512.2 | + | 149742 | 0.66 | 0.983141 |
Target: 5'- aGGAGGACgacgaGGGGGaCGaccccgCGAugGACc -3' miRNA: 3'- gCUUCCUGg----CCCCUaGCa-----GCUugCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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