miRNA display CGI


Results 21 - 40 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9117 5' -55 NC_002512.2 + 108589 0.66 0.981219
Target:  5'- uCGggGGGCCccGGGGAgCGgCGGccGCGGg -3'
miRNA:   3'- -GCuuCCUGG--CCCCUaGCaGCU--UGCUg -5'
9117 5' -55 NC_002512.2 + 4449 0.66 0.981219
Target:  5'- uGccGGGCgCGGGGGUCGgCGu-CGGCc -3'
miRNA:   3'- gCuuCCUG-GCCCCUAGCaGCuuGCUG- -5'
9117 5' -55 NC_002512.2 + 223899 0.66 0.981219
Target:  5'- aGGAGGAgCGGGag-CGgcgCGGGCGAg -3'
miRNA:   3'- gCUUCCUgGCCCcuaGCa--GCUUGCUg -5'
9117 5' -55 NC_002512.2 + 136440 0.66 0.980406
Target:  5'- aCGAGGGGacCCGGGGccacuacauccgCGcCGAguACGACg -3'
miRNA:   3'- -GCUUCCU--GGCCCCua----------GCaGCU--UGCUG- -5'
9117 5' -55 NC_002512.2 + 39548 0.66 0.979137
Target:  5'- uGAAGGACgCGGGacggugccaaGggCGgcgaCGGGCGACa -3'
miRNA:   3'- gCUUCCUG-GCCC----------CuaGCa---GCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 79940 0.66 0.979137
Target:  5'- cCGAGGcGGCgCGGGGGUCcgccugccGUCGGaaGCGGu -3'
miRNA:   3'- -GCUUC-CUG-GCCCCUAG--------CAGCU--UGCUg -5'
9117 5' -55 NC_002512.2 + 166011 0.66 0.979137
Target:  5'- cCGAcGGcuCCGGGGAcgCGUUcGGCGGCc -3'
miRNA:   3'- -GCUuCCu-GGCCCCUa-GCAGcUUGCUG- -5'
9117 5' -55 NC_002512.2 + 225512 0.66 0.979137
Target:  5'- gCGggGGucCCGGGcuUCG-CGGACGGg -3'
miRNA:   3'- -GCuuCCu-GGCCCcuAGCaGCUUGCUg -5'
9117 5' -55 NC_002512.2 + 201685 0.66 0.976889
Target:  5'- gCGAGGGcgGCCGcgucuggugcGGGAUCGgCG-GCGGCg -3'
miRNA:   3'- -GCUUCC--UGGC----------CCCUAGCaGCuUGCUG- -5'
9117 5' -55 NC_002512.2 + 47735 0.66 0.976889
Target:  5'- aGGAGGGCuCGGaacaGAUCGUgGAGCuGCa -3'
miRNA:   3'- gCUUCCUG-GCCc---CUAGCAgCUUGcUG- -5'
9117 5' -55 NC_002512.2 + 226216 0.66 0.976889
Target:  5'- gGGAGGACCuccGGAcCGUCGGccGCGAg -3'
miRNA:   3'- gCUUCCUGGcc-CCUaGCAGCU--UGCUg -5'
9117 5' -55 NC_002512.2 + 11381 0.66 0.976889
Target:  5'- aCGAGGGGuCCGacGGcUCGgacgCGGACGACc -3'
miRNA:   3'- -GCUUCCU-GGCc-CCuAGCa---GCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 142053 0.66 0.976889
Target:  5'- gCGAGGGcccgacgcccgGCCgGGGGAUCGcUCGGGgGuGCa -3'
miRNA:   3'- -GCUUCC-----------UGG-CCCCUAGC-AGCUUgC-UG- -5'
9117 5' -55 NC_002512.2 + 152801 0.66 0.974467
Target:  5'- uCGGAGGuCCGcGGcGA-CGgCGGGCGGCg -3'
miRNA:   3'- -GCUUCCuGGC-CC-CUaGCaGCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 119217 0.66 0.974467
Target:  5'- gCGAgcaccAGGACCGGcugcccgCgGUCGAGCGGCg -3'
miRNA:   3'- -GCU-----UCCUGGCCccua---G-CAGCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 7806 0.66 0.974467
Target:  5'- gGAacGGGGuCCGGGGAgcggacUgGUUGAGCGGa -3'
miRNA:   3'- gCU--UCCU-GGCCCCU------AgCAGCUUGCUg -5'
9117 5' -55 NC_002512.2 + 152184 0.66 0.974467
Target:  5'- uCGcAGGACCGGGG-UCcUCGgagaGugGACc -3'
miRNA:   3'- -GCuUCCUGGCCCCuAGcAGC----UugCUG- -5'
9117 5' -55 NC_002512.2 + 100490 0.66 0.974467
Target:  5'- ---cGGACCuuGGGGAggccgcggUCGUCGAGCa-- -3'
miRNA:   3'- gcuuCCUGG--CCCCU--------AGCAGCUUGcug -5'
9117 5' -55 NC_002512.2 + 135026 0.66 0.974467
Target:  5'- aCGAcgccAGGAUCGGGGGccCGUCuGACG-Cg -3'
miRNA:   3'- -GCU----UCCUGGCCCCUa-GCAGcUUGCuG- -5'
9117 5' -55 NC_002512.2 + 67989 0.66 0.974467
Target:  5'- aGGAGGGCCGGcgcgaGGAgaGg-GAGCGACg -3'
miRNA:   3'- gCUUCCUGGCC-----CCUagCagCUUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.