miRNA display CGI


Results 41 - 60 of 184 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9117 5' -55 NC_002512.2 + 192517 0.67 0.971866
Target:  5'- uCGGAGGACauGGGGUC--CG-ACGACg -3'
miRNA:   3'- -GCUUCCUGgcCCCUAGcaGCuUGCUG- -5'
9117 5' -55 NC_002512.2 + 123708 0.67 0.971866
Target:  5'- cCGAAGGACCcGGcGUCGcCGuacgccuACGGCa -3'
miRNA:   3'- -GCUUCCUGGcCCcUAGCaGCu------UGCUG- -5'
9117 5' -55 NC_002512.2 + 36839 0.67 0.971866
Target:  5'- uGggGaACUGGGGGgacaCGUCGGGcCGAUa -3'
miRNA:   3'- gCuuCcUGGCCCCUa---GCAGCUU-GCUG- -5'
9117 5' -55 NC_002512.2 + 17023 0.67 0.971866
Target:  5'- cCGGAGGA--GGGGAcgcUCGgaggggaCGGACGGCg -3'
miRNA:   3'- -GCUUCCUggCCCCU---AGCa------GCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 121882 0.67 0.971866
Target:  5'- gGGAGGuCgCGGGGGaCGcUCG-GCGACg -3'
miRNA:   3'- gCUUCCuG-GCCCCUaGC-AGCuUGCUG- -5'
9117 5' -55 NC_002512.2 + 38663 0.67 0.970217
Target:  5'- cCGAGGaGGCCGGGGA-CGcccccggggaagacCGAGcCGACg -3'
miRNA:   3'- -GCUUC-CUGGCCCCUaGCa-------------GCUU-GCUG- -5'
9117 5' -55 NC_002512.2 + 166569 0.67 0.96908
Target:  5'- aGggGGAgaaCGGGGAgugUCGggaGAACGGg -3'
miRNA:   3'- gCuuCCUg--GCCCCU---AGCag-CUUGCUg -5'
9117 5' -55 NC_002512.2 + 194023 0.67 0.96908
Target:  5'- gCGAuGGACCGGGaGUCGgCGAuccaGGCc -3'
miRNA:   3'- -GCUuCCUGGCCCcUAGCaGCUug--CUG- -5'
9117 5' -55 NC_002512.2 + 27240 0.67 0.96908
Target:  5'- gGAGcGGGCCGGGcuaggagcucaGAUCGUCGGucCGGu -3'
miRNA:   3'- gCUU-CCUGGCCC-----------CUAGCAGCUu-GCUg -5'
9117 5' -55 NC_002512.2 + 126248 0.67 0.96908
Target:  5'- aGGAGGGCCGGGuGUC--CGAAgcCGACc -3'
miRNA:   3'- gCUUCCUGGCCCcUAGcaGCUU--GCUG- -5'
9117 5' -55 NC_002512.2 + 43268 0.67 0.96908
Target:  5'- gCGAGcuGGucuCCuggaGGGGGUCGUCGAACa-- -3'
miRNA:   3'- -GCUU--CCu--GG----CCCCUAGCAGCUUGcug -5'
9117 5' -55 NC_002512.2 + 97211 0.67 0.96908
Target:  5'- gCGgcGGGCCGGGcGGgaCGUCGA--GGCg -3'
miRNA:   3'- -GCuuCCUGGCCC-CUa-GCAGCUugCUG- -5'
9117 5' -55 NC_002512.2 + 228510 0.67 0.96908
Target:  5'- aGAGGGACgCGGaGGAgagaCGgaggCGAcgagACGACa -3'
miRNA:   3'- gCUUCCUG-GCC-CCUa---GCa---GCU----UGCUG- -5'
9117 5' -55 NC_002512.2 + 200424 0.67 0.966102
Target:  5'- aGGAGGACgaggagaaGGGGUCGUCGuAGCG-Ca -3'
miRNA:   3'- gCUUCCUGgc------CCCUAGCAGC-UUGCuG- -5'
9117 5' -55 NC_002512.2 + 191301 0.67 0.966102
Target:  5'- gCGggGGACgGGGGccgggacgcggGUCGggacgCGGgugccguccGCGACg -3'
miRNA:   3'- -GCuuCCUGgCCCC-----------UAGCa----GCU---------UGCUG- -5'
9117 5' -55 NC_002512.2 + 218590 0.67 0.966102
Target:  5'- uCGGAGGucuccCCGGGGucUCGcccgcggacUCGAAgGACg -3'
miRNA:   3'- -GCUUCCu----GGCCCCu-AGC---------AGCUUgCUG- -5'
9117 5' -55 NC_002512.2 + 74649 0.67 0.966102
Target:  5'- cCGggGGAgaUCGGGGGagcUCGggGGACGGg -3'
miRNA:   3'- -GCuuCCU--GGCCCCU---AGCagCUUGCUg -5'
9117 5' -55 NC_002512.2 + 4260 0.67 0.966102
Target:  5'- uCGggGGAUacaGGucGUCGgacCGGACGACg -3'
miRNA:   3'- -GCuuCCUGg--CCccUAGCa--GCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 55037 0.67 0.966102
Target:  5'- gGucGGGCCGccuaccgacGGGAgagaCGaUCGAGCGACa -3'
miRNA:   3'- gCuuCCUGGC---------CCCUa---GC-AGCUUGCUG- -5'
9117 5' -55 NC_002512.2 + 93756 0.67 0.962928
Target:  5'- aCGGAGGGCUcggagggagggaGGGaGGUCGggagcggaUCGggUGACg -3'
miRNA:   3'- -GCUUCCUGG------------CCC-CUAGC--------AGCuuGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.