miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9119 5' -59.3 NC_002512.2 + 191020 0.66 0.888994
Target:  5'- cGGACCGAGgUG-CCUgcgaggcGGGgcgcggcgcacGUGGACCg -3'
miRNA:   3'- -UCUGGCUCgGCaGGA-------CCCa----------CACCUGG- -5'
9119 5' -59.3 NC_002512.2 + 195178 0.66 0.883802
Target:  5'- cAGGCCGAGaCGggcgaugauacgacgCCUGGGUGccGGugUc -3'
miRNA:   3'- -UCUGGCUCgGCa--------------GGACCCACa-CCugG- -5'
9119 5' -59.3 NC_002512.2 + 105308 0.66 0.883144
Target:  5'- aAGAacaCG-GCCGUCa-GGGagccGUGGGCCg -3'
miRNA:   3'- -UCUg--GCuCGGCAGgaCCCa---CACCUGG- -5'
9119 5' -59.3 NC_002512.2 + 220023 0.66 0.883144
Target:  5'- gAGGCCGcuCCGUCUcgGGGUccGGGCg -3'
miRNA:   3'- -UCUGGCucGGCAGGa-CCCAcaCCUGg -5'
9119 5' -59.3 NC_002512.2 + 49738 0.66 0.879154
Target:  5'- gGGACgGAgGCCGUCCUGGaccgcccgacgcUGGACg -3'
miRNA:   3'- -UCUGgCU-CGGCAGGACCcac---------ACCUGg -5'
9119 5' -59.3 NC_002512.2 + 121205 0.66 0.876455
Target:  5'- uGGCCGAcagcgcccucGUCGUCggcgGGGaguacaUGUGGACCg -3'
miRNA:   3'- uCUGGCU----------CGGCAGga--CCC------ACACCUGG- -5'
9119 5' -59.3 NC_002512.2 + 131071 0.66 0.876455
Target:  5'- gAGGCCGAuccgucgcuccgGCCG-CCgGGGUaccuggacGUGGugCg -3'
miRNA:   3'- -UCUGGCU------------CGGCaGGaCCCA--------CACCugG- -5'
9119 5' -59.3 NC_002512.2 + 88495 0.66 0.876455
Target:  5'- uGGAuCCGcAGCCGcUCC-GGGUGcaUGG-CCg -3'
miRNA:   3'- -UCU-GGC-UCGGC-AGGaCCCAC--ACCuGG- -5'
9119 5' -59.3 NC_002512.2 + 195562 0.66 0.868873
Target:  5'- --cCCGGGUCG-CC-GGGUcccugaaGUGGACCg -3'
miRNA:   3'- ucuGGCUCGGCaGGaCCCA-------CACCUGG- -5'
9119 5' -59.3 NC_002512.2 + 41796 0.66 0.865351
Target:  5'- cGACCGAGUugccguucucgcggaCGacgaugUCCUGGcUGUGGACg -3'
miRNA:   3'- uCUGGCUCG---------------GC------AGGACCcACACCUGg -5'
9119 5' -59.3 NC_002512.2 + 41900 0.66 0.862499
Target:  5'- aGGuCCGAGCUGUCCUGacgaugaacuuGGUGagcucgcgguUGGAgCu -3'
miRNA:   3'- -UCuGGCUCGGCAGGAC-----------CCAC----------ACCUgG- -5'
9119 5' -59.3 NC_002512.2 + 221177 0.66 0.862499
Target:  5'- cGGCCGA-CCGaCCUcGGaGUGgacgGGACCc -3'
miRNA:   3'- uCUGGCUcGGCaGGA-CC-CACa---CCUGG- -5'
9119 5' -59.3 NC_002512.2 + 187041 0.66 0.862499
Target:  5'- aGGACCGGGCCucCCUGGagacGGGCUg -3'
miRNA:   3'- -UCUGGCUCGGcaGGACCcacaCCUGG- -5'
9119 5' -59.3 NC_002512.2 + 47458 0.66 0.862499
Target:  5'- gAGGCCGAgGCCGaguUCCgcaaGGcgGUGGACa -3'
miRNA:   3'- -UCUGGCU-CGGC---AGGac--CCa-CACCUGg -5'
9119 5' -59.3 NC_002512.2 + 134992 0.66 0.862499
Target:  5'- cGACCGGGacgccuacccguUCGUCCUGGaGgauucGGGCCg -3'
miRNA:   3'- uCUGGCUC------------GGCAGGACC-Caca--CCUGG- -5'
9119 5' -59.3 NC_002512.2 + 95689 0.66 0.855241
Target:  5'- -cGCCGGGCC-UCCggcGGGgacgGgGGGCCg -3'
miRNA:   3'- ucUGGCUCGGcAGGa--CCCa---CaCCUGG- -5'
9119 5' -59.3 NC_002512.2 + 14767 0.67 0.847802
Target:  5'- cGGACCccGGCCGUUCUGGcG-GUcGGCCg -3'
miRNA:   3'- -UCUGGc-UCGGCAGGACC-CaCAcCUGG- -5'
9119 5' -59.3 NC_002512.2 + 45104 0.67 0.840189
Target:  5'- gAGGcCCGGGCCacGUCCUcGGG-GUcgacgaccacGGGCCg -3'
miRNA:   3'- -UCU-GGCUCGG--CAGGA-CCCaCA----------CCUGG- -5'
9119 5' -59.3 NC_002512.2 + 87272 0.67 0.840189
Target:  5'- gGGAgCGAacacGCgGUCgUGGG-GUGGACg -3'
miRNA:   3'- -UCUgGCU----CGgCAGgACCCaCACCUGg -5'
9119 5' -59.3 NC_002512.2 + 113423 0.67 0.840189
Target:  5'- -cGCCGGGaucaccgccCCGUCCccgagcUGGGUggcgaucagGUGGACCa -3'
miRNA:   3'- ucUGGCUC---------GGCAGG------ACCCA---------CACCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.