miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9119 5' -59.3 NC_002512.2 + 191020 0.66 0.888994
Target:  5'- cGGACCGAGgUG-CCUgcgaggcGGGgcgcggcgcacGUGGACCg -3'
miRNA:   3'- -UCUGGCUCgGCaGGA-------CCCa----------CACCUGG- -5'
9119 5' -59.3 NC_002512.2 + 216577 0.69 0.719023
Target:  5'- cGGGCCagcgaGGCCagGcCCUGGGUGUcgauccGGACCg -3'
miRNA:   3'- -UCUGGc----UCGG--CaGGACCCACA------CCUGG- -5'
9119 5' -59.3 NC_002512.2 + 204896 0.69 0.70016
Target:  5'- cGGACggCGAGCgGUCCUggucGGGUGacggGGACg -3'
miRNA:   3'- -UCUG--GCUCGgCAGGA----CCCACa---CCUGg -5'
9119 5' -59.3 NC_002512.2 + 107681 1.12 0.001692
Target:  5'- cAGACCGAGCCGUCCUGGGUGUGGACCa -3'
miRNA:   3'- -UCUGGCUCGGCAGGACCCACACCUGG- -5'
9119 5' -59.3 NC_002512.2 + 221177 0.66 0.862499
Target:  5'- cGGCCGA-CCGaCCUcGGaGUGgacgGGACCc -3'
miRNA:   3'- uCUGGCUcGGCaGGA-CC-CACa---CCUGG- -5'
9119 5' -59.3 NC_002512.2 + 187041 0.66 0.862499
Target:  5'- aGGACCGGGCCucCCUGGagacGGGCUg -3'
miRNA:   3'- -UCUGGCUCGGcaGGACCcacaCCUGG- -5'
9119 5' -59.3 NC_002512.2 + 90484 0.67 0.840189
Target:  5'- -cACCGGGgCGUCCUcgacGGGaucgGGGCCg -3'
miRNA:   3'- ucUGGCUCgGCAGGA----CCCaca-CCUGG- -5'
9119 5' -59.3 NC_002512.2 + 152188 0.67 0.824464
Target:  5'- aGGACCGGG--GUCCUcGGaGaGUGGACCc -3'
miRNA:   3'- -UCUGGCUCggCAGGA-CC-CaCACCUGG- -5'
9119 5' -59.3 NC_002512.2 + 215630 0.68 0.799724
Target:  5'- uGGCCGAGCUcuucgCCgugGGGcUGcGGGCCg -3'
miRNA:   3'- uCUGGCUCGGca---GGa--CCC-ACaCCUGG- -5'
9119 5' -59.3 NC_002512.2 + 157366 0.69 0.728358
Target:  5'- gAGGuCCGGGCCG-CC-GGGcagGGACCg -3'
miRNA:   3'- -UCU-GGCUCGGCaGGaCCCacaCCUGG- -5'
9119 5' -59.3 NC_002512.2 + 162232 0.68 0.791198
Target:  5'- cGGUCGAGCCcgcGUCCgGGGgcccGUGGACg -3'
miRNA:   3'- uCUGGCUCGG---CAGGaCCCa---CACCUGg -5'
9119 5' -59.3 NC_002512.2 + 226190 0.68 0.799724
Target:  5'- cGACCGGGUCGaccUCCgucgGGGacggGaGGACCu -3'
miRNA:   3'- uCUGGCUCGGC---AGGa---CCCa---CaCCUGG- -5'
9119 5' -59.3 NC_002512.2 + 220023 0.66 0.883144
Target:  5'- gAGGCCGcuCCGUCUcgGGGUccGGGCg -3'
miRNA:   3'- -UCUGGCucGGCAGGa-CCCAcaCCUGg -5'
9119 5' -59.3 NC_002512.2 + 196638 0.69 0.73762
Target:  5'- uGGCCGAcGCCGUgugUCUGGG---GGGCCg -3'
miRNA:   3'- uCUGGCU-CGGCA---GGACCCacaCCUGG- -5'
9119 5' -59.3 NC_002512.2 + 88495 0.66 0.876455
Target:  5'- uGGAuCCGcAGCCGcUCC-GGGUGcaUGG-CCg -3'
miRNA:   3'- -UCU-GGC-UCGGC-AGGaCCCAC--ACCuGG- -5'
9119 5' -59.3 NC_002512.2 + 183505 0.68 0.799724
Target:  5'- cGGCCGcgagggggaGGCCGUCCucgccUGGcUGcGGACCg -3'
miRNA:   3'- uCUGGC---------UCGGCAGG-----ACCcACaCCUGG- -5'
9119 5' -59.3 NC_002512.2 + 225843 0.69 0.728358
Target:  5'- gGGAUCGAGCCGcUCCUgucccGGGUGUcGucucuCCg -3'
miRNA:   3'- -UCUGGCUCGGC-AGGA-----CCCACAcCu----GG- -5'
9119 5' -59.3 NC_002512.2 + 226953 0.69 0.713389
Target:  5'- aAGGCCGcgcgggaggccaagaAGCUGUCCaaGGUGgucaGGGCCa -3'
miRNA:   3'- -UCUGGC---------------UCGGCAGGacCCACa---CCUGG- -5'
9119 5' -59.3 NC_002512.2 + 195562 0.66 0.868873
Target:  5'- --cCCGGGUCG-CC-GGGUcccugaaGUGGACCg -3'
miRNA:   3'- ucuGGCUCGGCaGGaCCCA-------CACCUGG- -5'
9119 5' -59.3 NC_002512.2 + 95689 0.66 0.855241
Target:  5'- -cGCCGGGCC-UCCggcGGGgacgGgGGGCCg -3'
miRNA:   3'- ucUGGCUCGGcAGGa--CCCa---CaCCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.