miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9121 5' -55.9 NC_002512.2 + 220038 0.66 0.966309
Target:  5'- cGGGGUcCGGgCGAUCUCGACauGGCUcCg -3'
miRNA:   3'- -UCCCAcGUCaGCUAGAGCUG--CUGGaG- -5'
9121 5' -55.9 NC_002512.2 + 155026 0.66 0.966309
Target:  5'- cGGGUGCGGUUccggagcgGAUCgCGACGGggagggUCUCc -3'
miRNA:   3'- uCCCACGUCAG--------CUAGaGCUGCU------GGAG- -5'
9121 5' -55.9 NC_002512.2 + 123234 0.66 0.963121
Target:  5'- --aGUGCGGgcucgacuucuUCGAgCUCGACGACCg- -3'
miRNA:   3'- uccCACGUC-----------AGCUaGAGCUGCUGGag -5'
9121 5' -55.9 NC_002512.2 + 136644 0.66 0.959728
Target:  5'- cAGGG-GCAG-CGA-CUCGAUGGCgUa -3'
miRNA:   3'- -UCCCaCGUCaGCUaGAGCUGCUGgAg -5'
9121 5' -55.9 NC_002512.2 + 19356 0.66 0.959728
Target:  5'- ---aUGCcggaccGUCGGgggCUCGGCGGCCUCg -3'
miRNA:   3'- ucccACGu-----CAGCUa--GAGCUGCUGGAG- -5'
9121 5' -55.9 NC_002512.2 + 146724 0.66 0.959728
Target:  5'- cGGGGcgGCGGccgcggccgcCGggCcCGACGACCUCg -3'
miRNA:   3'- -UCCCa-CGUCa---------GCuaGaGCUGCUGGAG- -5'
9121 5' -55.9 NC_002512.2 + 16832 0.66 0.958669
Target:  5'- cGGGGcuggGCAGggCGAUCUCGaucccccgcagccgGCGgacgcACCUCg -3'
miRNA:   3'- -UCCCa---CGUCa-GCUAGAGC--------------UGC-----UGGAG- -5'
9121 5' -55.9 NC_002512.2 + 150682 0.66 0.957592
Target:  5'- cGGGcgcgGCGGUCGccccgacggaccguuGgcUCUCGGCGGCCg- -3'
miRNA:   3'- uCCCa---CGUCAGC---------------U--AGAGCUGCUGGag -5'
9121 5' -55.9 NC_002512.2 + 9994 0.66 0.952311
Target:  5'- gAGGaGgGCGGUCGGcucgUCUcCGAcccCGGCCUCg -3'
miRNA:   3'- -UCC-CaCGUCAGCU----AGA-GCU---GCUGGAG- -5'
9121 5' -55.9 NC_002512.2 + 106635 0.66 0.952311
Target:  5'- gGGGGUaGCGG-CGccggCUCGGCGAguaguCCUCc -3'
miRNA:   3'- -UCCCA-CGUCaGCua--GAGCUGCU-----GGAG- -5'
9121 5' -55.9 NC_002512.2 + 224356 0.66 0.948279
Target:  5'- cGGGGUcGCGGgcgggagaccUCGGUC-CGG-GACCUCg -3'
miRNA:   3'- -UCCCA-CGUC----------AGCUAGaGCUgCUGGAG- -5'
9121 5' -55.9 NC_002512.2 + 72955 0.66 0.948279
Target:  5'- cAGGGUgGCGaccGUgGGcuccuUCUUGACGGCCUUg -3'
miRNA:   3'- -UCCCA-CGU---CAgCU-----AGAGCUGCUGGAG- -5'
9121 5' -55.9 NC_002512.2 + 86611 0.66 0.948279
Target:  5'- gGGGGaGCGGUCGGUucCUCGu---CCUCg -3'
miRNA:   3'- -UCCCaCGUCAGCUA--GAGCugcuGGAG- -5'
9121 5' -55.9 NC_002512.2 + 221453 0.67 0.939555
Target:  5'- cGGGGcGCGGUCG-UC-CGAcCGGCCg- -3'
miRNA:   3'- -UCCCaCGUCAGCuAGaGCU-GCUGGag -5'
9121 5' -55.9 NC_002512.2 + 227712 0.67 0.939555
Target:  5'- gGGGGcGCGGUaCGGUCccCGACu-CCUCg -3'
miRNA:   3'- -UCCCaCGUCA-GCUAGa-GCUGcuGGAG- -5'
9121 5' -55.9 NC_002512.2 + 23105 0.67 0.939555
Target:  5'- cGGcGUGCGGaugaUCGcgCUgGACGACCcCa -3'
miRNA:   3'- uCC-CACGUC----AGCuaGAgCUGCUGGaG- -5'
9121 5' -55.9 NC_002512.2 + 68903 0.67 0.934858
Target:  5'- cGGG-GCGGUCGugcugCUgGccgccGCGGCCUCg -3'
miRNA:   3'- uCCCaCGUCAGCua---GAgC-----UGCUGGAG- -5'
9121 5' -55.9 NC_002512.2 + 191598 0.67 0.934858
Target:  5'- -cGGUcgcGCGGUCGAgucCUCGGCGuCUUCu -3'
miRNA:   3'- ucCCA---CGUCAGCUa--GAGCUGCuGGAG- -5'
9121 5' -55.9 NC_002512.2 + 103575 0.67 0.933892
Target:  5'- uGGGGagacgacgccucGCAGgccacgagggCGGUgUCGACGGCCUCc -3'
miRNA:   3'- -UCCCa-----------CGUCa---------GCUAgAGCUGCUGGAG- -5'
9121 5' -55.9 NC_002512.2 + 44526 0.67 0.929936
Target:  5'- aAGGuGUcGCAGUCGAcggCgauggCGGCGGCCa- -3'
miRNA:   3'- -UCC-CA-CGUCAGCUa--Ga----GCUGCUGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.