miRNA display CGI


Results 1 - 20 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9122 3' -63 NC_002512.2 + 24424 0.66 0.759057
Target:  5'- cGUCCCaGUAGUaCUCGUcCUCGUCGu -3'
miRNA:   3'- cCAGGGcCGUCGgGAGCGuGGGCAGC- -5'
9122 3' -63 NC_002512.2 + 116750 0.66 0.759057
Target:  5'- ---gCCGGC-GCCC-CGCGCgCGUCu -3'
miRNA:   3'- ccagGGCCGuCGGGaGCGUGgGCAGc -5'
9122 3' -63 NC_002512.2 + 2442 0.66 0.759057
Target:  5'- --cCCCGGCAGCgcgaaggugaCCgcggccCGCGCCCG-CGc -3'
miRNA:   3'- ccaGGGCCGUCG----------GGa-----GCGUGGGCaGC- -5'
9122 3' -63 NC_002512.2 + 118657 0.66 0.732363
Target:  5'- -cUCCgGGC-GCCCggcCGCCCGUCa -3'
miRNA:   3'- ccAGGgCCGuCGGGagcGUGGGCAGc -5'
9122 3' -63 NC_002512.2 + 15522 0.66 0.735065
Target:  5'- uGGUCCCGGagccagaaggcgcucUGGCUCUCGCugaggagGCCggaguCGUCGg -3'
miRNA:   3'- -CCAGGGCC---------------GUCGGGAGCG-------UGG-----GCAGC- -5'
9122 3' -63 NC_002512.2 + 127015 0.66 0.750244
Target:  5'- cGGUCCgGGCGcGUuucuCCgacaagagCGUGCCCGUCu -3'
miRNA:   3'- -CCAGGgCCGU-CG----GGa-------GCGUGGGCAGc -5'
9122 3' -63 NC_002512.2 + 74761 0.66 0.732363
Target:  5'- gGGaCCCGGCGGCCCUUuauaUACaCGUUGc -3'
miRNA:   3'- -CCaGGGCCGUCGGGAGc---GUGgGCAGC- -5'
9122 3' -63 NC_002512.2 + 49232 0.66 0.750244
Target:  5'- gGGgccaCCgCGGCGGCCUgcCGCACCCu--- -3'
miRNA:   3'- -CCa---GG-GCCGUCGGGa-GCGUGGGcagc -5'
9122 3' -63 NC_002512.2 + 65410 0.66 0.741344
Target:  5'- aGUCCUcguagcucggcgGGCGGUCgUCGCcCCCGcCGa -3'
miRNA:   3'- cCAGGG------------CCGUCGGgAGCGuGGGCaGC- -5'
9122 3' -63 NC_002512.2 + 4077 0.66 0.735964
Target:  5'- aGGUCCCaGGCcacccggccgcccgcGGCCCggccggCGCAgCC-UCGg -3'
miRNA:   3'- -CCAGGG-CCG---------------UCGGGa-----GCGUgGGcAGC- -5'
9122 3' -63 NC_002512.2 + 72070 0.66 0.75378
Target:  5'- aGGUCgCGGcCGGCCCcCGCagcgaccugcacaccGCCCGg-- -3'
miRNA:   3'- -CCAGgGCC-GUCGGGaGCG---------------UGGGCagc -5'
9122 3' -63 NC_002512.2 + 81344 0.66 0.750244
Target:  5'- -uUCCUGGUGGgcgccuCCCUCGCGgCCGgggCGg -3'
miRNA:   3'- ccAGGGCCGUC------GGGAGCGUgGGCa--GC- -5'
9122 3' -63 NC_002512.2 + 3232 0.66 0.735964
Target:  5'- uGGaCCCGGCgcgucgggugacgacGGUCCgcgggcUCGguCCCGUCGc -3'
miRNA:   3'- -CCaGGGCCG---------------UCGGG------AGCguGGGCAGC- -5'
9122 3' -63 NC_002512.2 + 45498 0.66 0.731461
Target:  5'- --cCCCGGCGGCggccacgCCgaaaGCGCCCG-CGg -3'
miRNA:   3'- ccaGGGCCGUCG-------GGag--CGUGGGCaGC- -5'
9122 3' -63 NC_002512.2 + 123426 0.66 0.750244
Target:  5'- aGGUCCC-GCcGCCCgUGCGCa-GUCGg -3'
miRNA:   3'- -CCAGGGcCGuCGGGaGCGUGggCAGC- -5'
9122 3' -63 NC_002512.2 + 83230 0.66 0.747583
Target:  5'- cGGUCCCGGggaAGCCUcccuccucgUCGCcGCCagcagcuggcggauCGUCGg -3'
miRNA:   3'- -CCAGGGCCg--UCGGG---------AGCG-UGG--------------GCAGC- -5'
9122 3' -63 NC_002512.2 + 84638 0.66 0.723309
Target:  5'- cGUCCaggCGGCGGCCCaggaaguucucgUCGCGCCgG-Ca -3'
miRNA:   3'- cCAGG---GCCGUCGGG------------AGCGUGGgCaGc -5'
9122 3' -63 NC_002512.2 + 85204 0.66 0.750244
Target:  5'- gGGUCgCCGGgucgucGUCCUCGCucGCCCGgaccgCGa -3'
miRNA:   3'- -CCAG-GGCCgu----CGGGAGCG--UGGGCa----GC- -5'
9122 3' -63 NC_002512.2 + 45978 0.66 0.714188
Target:  5'- gGGUCCCgaGGCAGCCgUUCGa--CUGUCc -3'
miRNA:   3'- -CCAGGG--CCGUCGG-GAGCgugGGCAGc -5'
9122 3' -63 NC_002512.2 + 38928 0.66 0.759057
Target:  5'- gGGgccgCCgCGGCGggcGCCCgcgUGCGCCCGg-- -3'
miRNA:   3'- -CCa---GG-GCCGU---CGGGa--GCGUGGGCagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.