miRNA display CGI


Results 1 - 20 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9122 3' -63 NC_002512.2 + 80517 0.71 0.449381
Target:  5'- cGUCCCcGC-GCCCUCGUccucuccCCCGUCGu -3'
miRNA:   3'- cCAGGGcCGuCGGGAGCGu------GGGCAGC- -5'
9122 3' -63 NC_002512.2 + 32097 0.72 0.385128
Target:  5'- cGG-CCCGGguGUCCUCGCGgUCGaggUCGg -3'
miRNA:   3'- -CCaGGGCCguCGGGAGCGUgGGC---AGC- -5'
9122 3' -63 NC_002512.2 + 35918 0.72 0.385128
Target:  5'- cGGUCaggagccgCCGGCGGCCuCUCGCGCCaGaCGa -3'
miRNA:   3'- -CCAG--------GGCCGUCGG-GAGCGUGGgCaGC- -5'
9122 3' -63 NC_002512.2 + 80472 0.72 0.385128
Target:  5'- --cCCCGccGCGGucCCCUCGCgGCCCGUCGa -3'
miRNA:   3'- ccaGGGC--CGUC--GGGAGCG-UGGGCAGC- -5'
9122 3' -63 NC_002512.2 + 79200 0.72 0.400617
Target:  5'- cGGUCCguCGGCGGCgaCCgcCGCGCCCG-CGg -3'
miRNA:   3'- -CCAGG--GCCGUCG--GGa-GCGUGGGCaGC- -5'
9122 3' -63 NC_002512.2 + 40311 0.71 0.432757
Target:  5'- aGGaCCCGGCGGCCCggucggaaGCAgaCGUCGc -3'
miRNA:   3'- -CCaGGGCCGUCGGGag------CGUggGCAGC- -5'
9122 3' -63 NC_002512.2 + 109637 0.71 0.441025
Target:  5'- cGGUCCCgcgGGUAgGCCCUCcacgacagGCCCGUCGc -3'
miRNA:   3'- -CCAGGG---CCGU-CGGGAGcg------UGGGCAGC- -5'
9122 3' -63 NC_002512.2 + 103217 0.71 0.441025
Target:  5'- -aUCCgaGGCGGCUCgcgUCGcCGCCCGUCGa -3'
miRNA:   3'- ccAGGg-CCGUCGGG---AGC-GUGGGCAGC- -5'
9122 3' -63 NC_002512.2 + 75589 0.71 0.449381
Target:  5'- cGGUCgacgUGGCGGCUUUCGCGCgCGUCu -3'
miRNA:   3'- -CCAGg---GCCGUCGGGAGCGUGgGCAGc -5'
9122 3' -63 NC_002512.2 + 45264 0.73 0.348177
Target:  5'- cGGcCgCCGGCggGGCgCUCGCGCUCGUCu -3'
miRNA:   3'- -CCaG-GGCCG--UCGgGAGCGUGGGCAGc -5'
9122 3' -63 NC_002512.2 + 7237 0.73 0.341098
Target:  5'- cGG-CCCGGcCGGCCgUCGCGgcggagcggcgUCCGUCGg -3'
miRNA:   3'- -CCaGGGCC-GUCGGgAGCGU-----------GGGCAGC- -5'
9122 3' -63 NC_002512.2 + 87207 0.73 0.341098
Target:  5'- aGUgCUCGGUgacGGCCCUCGUGCCCGUg- -3'
miRNA:   3'- cCA-GGGCCG---UCGGGAGCGUGGGCAgc -5'
9122 3' -63 NC_002512.2 + 3497 0.79 0.16047
Target:  5'- gGGUCCCGGCgccgucgucGGCCCUC-CACCCGa-- -3'
miRNA:   3'- -CCAGGGCCG---------UCGGGAGcGUGGGCagc -5'
9122 3' -63 NC_002512.2 + 98159 0.78 0.172095
Target:  5'- cGGU-UCGGCGGUCC-CGCGCCCGUCa -3'
miRNA:   3'- -CCAgGGCCGUCGGGaGCGUGGGCAGc -5'
9122 3' -63 NC_002512.2 + 112156 0.78 0.176134
Target:  5'- aGGUCCUGGa--CCCUCGCACCCauGUCGc -3'
miRNA:   3'- -CCAGGGCCgucGGGAGCGUGGG--CAGC- -5'
9122 3' -63 NC_002512.2 + 80761 0.78 0.176134
Target:  5'- gGGUCCCGGgGGUCCUCGCgGCUCGagGa -3'
miRNA:   3'- -CCAGGGCCgUCGGGAGCG-UGGGCagC- -5'
9122 3' -63 NC_002512.2 + 97780 0.74 0.300825
Target:  5'- --aCCgGGCGGCCCUCGaGCCCcgGUCGa -3'
miRNA:   3'- ccaGGgCCGUCGGGAGCgUGGG--CAGC- -5'
9122 3' -63 NC_002512.2 + 19368 0.74 0.313828
Target:  5'- cGGgggCUCGGCGG-CCUCGCGCUcgCGUCGg -3'
miRNA:   3'- -CCa--GGGCCGUCgGGAGCGUGG--GCAGC- -5'
9122 3' -63 NC_002512.2 + 79344 0.74 0.313828
Target:  5'- aGGUCgCGGCGGCguacCCUCGCGgCCGcCGc -3'
miRNA:   3'- -CCAGgGCCGUCG----GGAGCGUgGGCaGC- -5'
9122 3' -63 NC_002512.2 + 135646 0.74 0.313828
Target:  5'- gGGUCgCCGGCGGCCUgaUCGCgACCCaggccUCGg -3'
miRNA:   3'- -CCAG-GGCCGUCGGG--AGCG-UGGGc----AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.