miRNA display CGI


Results 1 - 20 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9122 3' -63 NC_002512.2 + 276 0.68 0.589926
Target:  5'- cGGUCCCcGCucccucuccgcccgGGCCCcuucUCGCcCCCGUCc -3'
miRNA:   3'- -CCAGGGcCG--------------UCGGG----AGCGuGGGCAGc -5'
9122 3' -63 NC_002512.2 + 1727 0.71 0.461224
Target:  5'- -cUCCCGcucCGGCUccgcguggaccugagCUCGCGCCCGUCGg -3'
miRNA:   3'- ccAGGGCc--GUCGG---------------GAGCGUGGGCAGC- -5'
9122 3' -63 NC_002512.2 + 1888 0.67 0.6865
Target:  5'- cGUCCCguccGGCuccGGCCCUCG-GCCC-UCGg -3'
miRNA:   3'- cCAGGG----CCG---UCGGGAGCgUGGGcAGC- -5'
9122 3' -63 NC_002512.2 + 2214 0.71 0.46635
Target:  5'- cGGUCgCCGGCGGCgccgccgcucuuCCUCcggacccggGCGCuCCGUCGc -3'
miRNA:   3'- -CCAG-GGCCGUCG------------GGAG---------CGUG-GGCAGC- -5'
9122 3' -63 NC_002512.2 + 2341 0.7 0.519116
Target:  5'- cGGUCgCGGacccGCCCUCcuccCGCCCGUCc -3'
miRNA:   3'- -CCAGgGCCgu--CGGGAGc---GUGGGCAGc -5'
9122 3' -63 NC_002512.2 + 2442 0.66 0.759057
Target:  5'- --cCCCGGCAGCgcgaaggugaCCgcggccCGCGCCCG-CGc -3'
miRNA:   3'- ccaGGGCCGUCG----------GGa-----GCGUGGGCaGC- -5'
9122 3' -63 NC_002512.2 + 3150 0.67 0.677185
Target:  5'- cGGagCCCGGUcccGCCgUCGuCGCCCG-CGg -3'
miRNA:   3'- -CCa-GGGCCGu--CGGgAGC-GUGGGCaGC- -5'
9122 3' -63 NC_002512.2 + 3232 0.66 0.735964
Target:  5'- uGGaCCCGGCgcgucgggugacgacGGUCCgcgggcUCGguCCCGUCGc -3'
miRNA:   3'- -CCaGGGCCG---------------UCGGG------AGCguGGGCAGC- -5'
9122 3' -63 NC_002512.2 + 3497 0.79 0.16047
Target:  5'- gGGUCCCGGCgccgucgucGGCCCUC-CACCCGa-- -3'
miRNA:   3'- -CCAGGGCCG---------UCGGGAGcGUGGGCagc -5'
9122 3' -63 NC_002512.2 + 3899 0.67 0.648141
Target:  5'- cGUCCCGGUc-CCCUUGCccccgagACCgGUCGu -3'
miRNA:   3'- cCAGGGCCGucGGGAGCG-------UGGgCAGC- -5'
9122 3' -63 NC_002512.2 + 4077 0.66 0.735964
Target:  5'- aGGUCCCaGGCcacccggccgcccgcGGCCCggccggCGCAgCC-UCGg -3'
miRNA:   3'- -CCAGGG-CCG---------------UCGGGa-----GCGUgGGcAGC- -5'
9122 3' -63 NC_002512.2 + 4310 0.68 0.639681
Target:  5'- --aCCCGGCGcCCCUCGaggucgGCCuCGUCGc -3'
miRNA:   3'- ccaGGGCCGUcGGGAGCg-----UGG-GCAGC- -5'
9122 3' -63 NC_002512.2 + 5520 0.67 0.649081
Target:  5'- aGGUCCCGGaccgAGgUCUCcCGCCCG-CGa -3'
miRNA:   3'- -CCAGGGCCg---UCgGGAGcGUGGGCaGC- -5'
9122 3' -63 NC_002512.2 + 5850 0.68 0.592731
Target:  5'- cGUcCCCGGCGGCCC-CGUcggaguCCCGggCGu -3'
miRNA:   3'- cCA-GGGCCGUCGGGaGCGu-----GGGCa-GC- -5'
9122 3' -63 NC_002512.2 + 6104 0.68 0.618054
Target:  5'- cGUcCCCGGCGacguccggucccucGaCCUCGCugUCGUCGg -3'
miRNA:   3'- cCA-GGGCCGU--------------CgGGAGCGugGGCAGC- -5'
9122 3' -63 NC_002512.2 + 7237 0.73 0.341098
Target:  5'- cGG-CCCGGcCGGCCgUCGCGgcggagcggcgUCCGUCGg -3'
miRNA:   3'- -CCaGGGCC-GUCGGgAGCGU-----------GGGCAGC- -5'
9122 3' -63 NC_002512.2 + 8039 0.69 0.546378
Target:  5'- aGGUCCCGGU--CCCgaggCGCcCCCG-CGg -3'
miRNA:   3'- -CCAGGGCCGucGGGa---GCGuGGGCaGC- -5'
9122 3' -63 NC_002512.2 + 8462 0.68 0.639681
Target:  5'- cGGUCCgcaUGGCGGCCgUCGgacagACCCGcCGc -3'
miRNA:   3'- -CCAGG---GCCGUCGGgAGCg----UGGGCaGC- -5'
9122 3' -63 NC_002512.2 + 8703 0.7 0.513727
Target:  5'- gGGUCCCguccacuccgaggucGGuCGGCCgCgcgCGCccGCCCGUCGa -3'
miRNA:   3'- -CCAGGG---------------CC-GUCGG-Ga--GCG--UGGGCAGC- -5'
9122 3' -63 NC_002512.2 + 12162 0.69 0.537236
Target:  5'- cGGUCCCuGCcGCCCcugaagCGgACCuCGUCGa -3'
miRNA:   3'- -CCAGGGcCGuCGGGa-----GCgUGG-GCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.