Results 1 - 20 of 232 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9122 | 3' | -63 | NC_002512.2 | + | 105113 | 1.09 | 0.001291 |
Target: 5'- gGGUCCCGGCAGCCCUCGCACCCGUCGu -3' miRNA: 3'- -CCAGGGCCGUCGGGAGCGUGGGCAGC- -5' |
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9122 | 3' | -63 | NC_002512.2 | + | 62150 | 0.8 | 0.13606 |
Target: 5'- --gCCCGGCAGCuCCUCGC-CCCGcUCGa -3' miRNA: 3'- ccaGGGCCGUCG-GGAGCGuGGGC-AGC- -5' |
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9122 | 3' | -63 | NC_002512.2 | + | 3497 | 0.79 | 0.16047 |
Target: 5'- gGGUCCCGGCgccgucgucGGCCCUC-CACCCGa-- -3' miRNA: 3'- -CCAGGGCCG---------UCGGGAGcGUGGGCagc -5' |
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9122 | 3' | -63 | NC_002512.2 | + | 98159 | 0.78 | 0.172095 |
Target: 5'- cGGU-UCGGCGGUCC-CGCGCCCGUCa -3' miRNA: 3'- -CCAgGGCCGUCGGGaGCGUGGGCAGc -5' |
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9122 | 3' | -63 | NC_002512.2 | + | 112156 | 0.78 | 0.176134 |
Target: 5'- aGGUCCUGGa--CCCUCGCACCCauGUCGc -3' miRNA: 3'- -CCAGGGCCgucGGGAGCGUGGG--CAGC- -5' |
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9122 | 3' | -63 | NC_002512.2 | + | 80761 | 0.78 | 0.176134 |
Target: 5'- gGGUCCCGGgGGUCCUCGCgGCUCGagGa -3' miRNA: 3'- -CCAGGGCCgUCGGGAGCG-UGGGCagC- -5' |
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9122 | 3' | -63 | NC_002512.2 | + | 119576 | 0.76 | 0.221345 |
Target: 5'- cGGgagCCCGGCGGgucCCCUCGCGCCagcaguGUCGc -3' miRNA: 3'- -CCa--GGGCCGUC---GGGAGCGUGGg-----CAGC- -5' |
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9122 | 3' | -63 | NC_002512.2 | + | 99606 | 0.75 | 0.25298 |
Target: 5'- cGUCCCGG--GCCC-CGCGCUCGUCGc -3' miRNA: 3'- cCAGGGCCguCGGGaGCGUGGGCAGC- -5' |
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9122 | 3' | -63 | NC_002512.2 | + | 157082 | 0.75 | 0.276075 |
Target: 5'- gGGUCgCCGGC-GCCCacggCGgGCCCGUCc -3' miRNA: 3'- -CCAG-GGCCGuCGGGa---GCgUGGGCAGc -5' |
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9122 | 3' | -63 | NC_002512.2 | + | 97780 | 0.74 | 0.300825 |
Target: 5'- --aCCgGGCGGCCCUCGaGCCCcgGUCGa -3' miRNA: 3'- ccaGGgCCGUCGGGAGCgUGGG--CAGC- -5' |
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9122 | 3' | -63 | NC_002512.2 | + | 189684 | 0.74 | 0.300825 |
Target: 5'- uGGUaCCGGCGGCCCUCGU---CGUCGa -3' miRNA: 3'- -CCAgGGCCGUCGGGAGCGuggGCAGC- -5' |
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9122 | 3' | -63 | NC_002512.2 | + | 79344 | 0.74 | 0.313828 |
Target: 5'- aGGUCgCGGCGGCguacCCUCGCGgCCGcCGc -3' miRNA: 3'- -CCAGgGCCGUCG----GGAGCGUgGGCaGC- -5' |
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9122 | 3' | -63 | NC_002512.2 | + | 19368 | 0.74 | 0.313828 |
Target: 5'- cGGgggCUCGGCGG-CCUCGCGCUcgCGUCGg -3' miRNA: 3'- -CCa--GGGCCGUCgGGAGCGUGG--GCAGC- -5' |
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9122 | 3' | -63 | NC_002512.2 | + | 107806 | 0.74 | 0.313828 |
Target: 5'- aGGUUCCGcaugucGCAGCCCcCGCugUCGUCa -3' miRNA: 3'- -CCAGGGC------CGUCGGGaGCGugGGCAGc -5' |
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9122 | 3' | -63 | NC_002512.2 | + | 135646 | 0.74 | 0.313828 |
Target: 5'- gGGUCgCCGGCGGCCUgaUCGCgACCCaggccUCGg -3' miRNA: 3'- -CCAG-GGCCGUCGGG--AGCG-UGGGc----AGC- -5' |
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9122 | 3' | -63 | NC_002512.2 | + | 99667 | 0.73 | 0.327252 |
Target: 5'- --cCCCGGCAGCUCgggcgucgcgUCGCugUCGUCGu -3' miRNA: 3'- ccaGGGCCGUCGGG----------AGCGugGGCAGC- -5' |
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9122 | 3' | -63 | NC_002512.2 | + | 7237 | 0.73 | 0.341098 |
Target: 5'- cGG-CCCGGcCGGCCgUCGCGgcggagcggcgUCCGUCGg -3' miRNA: 3'- -CCaGGGCC-GUCGGgAGCGU-----------GGGCAGC- -5' |
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9122 | 3' | -63 | NC_002512.2 | + | 87207 | 0.73 | 0.341098 |
Target: 5'- aGUgCUCGGUgacGGCCCUCGUGCCCGUg- -3' miRNA: 3'- cCA-GGGCCG---UCGGGAGCGUGGGCAgc -5' |
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9122 | 3' | -63 | NC_002512.2 | + | 45264 | 0.73 | 0.348177 |
Target: 5'- cGGcCgCCGGCggGGCgCUCGCGCUCGUCu -3' miRNA: 3'- -CCaG-GGCCG--UCGgGAGCGUGGGCAGc -5' |
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9122 | 3' | -63 | NC_002512.2 | + | 116479 | 0.73 | 0.37004 |
Target: 5'- -aUCCCGGCGGCCCacgCGCACuaCCGg-- -3' miRNA: 3'- ccAGGGCCGUCGGGa--GCGUG--GGCagc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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