miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9126 5' -60.1 NC_002512.2 + 222526 0.66 0.862859
Target:  5'- cGCCGCGg---CCGCCGucgcggugggcCGGGCUaCGg -3'
miRNA:   3'- cCGGCGCaucaGGUGGU-----------GCCCGA-GCa -5'
9126 5' -60.1 NC_002512.2 + 44548 0.66 0.832932
Target:  5'- uGGCgGCGg---CCACC-CGGGCggCGa -3'
miRNA:   3'- -CCGgCGCaucaGGUGGuGCCCGa-GCa -5'
9126 5' -60.1 NC_002512.2 + 184099 0.66 0.862145
Target:  5'- cGGCCcccgGCGggugcAGUUCGCCcacggggGCGGGUUCGc -3'
miRNA:   3'- -CCGG----CGCa----UCAGGUGG-------UGCCCGAGCa -5'
9126 5' -60.1 NC_002512.2 + 38474 0.66 0.85564
Target:  5'- -cCCGCccGGgCCGCCACGGcGCUCa- -3'
miRNA:   3'- ccGGCGcaUCaGGUGGUGCC-CGAGca -5'
9126 5' -60.1 NC_002512.2 + 36012 0.66 0.84372
Target:  5'- -cCCGCGUcGUCCACCGCcgcguccgauguacuGGGCagagCGg -3'
miRNA:   3'- ccGGCGCAuCAGGUGGUG---------------CCCGa---GCa -5'
9126 5' -60.1 NC_002512.2 + 108296 0.66 0.840671
Target:  5'- cGGCUugaugagcucgGUGUGGUCCAUgGCGGcGCgCGg -3'
miRNA:   3'- -CCGG-----------CGCAUCAGGUGgUGCC-CGaGCa -5'
9126 5' -60.1 NC_002512.2 + 10465 0.66 0.825032
Target:  5'- aGGCCGCcg---CCGCCcCGGGCgugggCGUc -3'
miRNA:   3'- -CCGGCGcaucaGGUGGuGCCCGa----GCA- -5'
9126 5' -60.1 NC_002512.2 + 222369 0.66 0.862859
Target:  5'- gGGCCGCcu--UCCcCgGCGGGCUCu- -3'
miRNA:   3'- -CCGGCGcaucAGGuGgUGCCCGAGca -5'
9126 5' -60.1 NC_002512.2 + 130766 0.66 0.832932
Target:  5'- cGGCCGUGcgcgaucucuUGGagCgGCC-CGGGCUCGc -3'
miRNA:   3'- -CCGGCGC----------AUCa-GgUGGuGCCCGAGCa -5'
9126 5' -60.1 NC_002512.2 + 123210 0.66 0.832932
Target:  5'- aGCUGCccgAGgacgucgCCGCCcaguGCGGGCUCGa -3'
miRNA:   3'- cCGGCGca-UCa------GGUGG----UGCCCGAGCa -5'
9126 5' -60.1 NC_002512.2 + 4146 0.66 0.829791
Target:  5'- cGGCCGCGccccgacugagcgAGU-CGCCGCG-GCUCGc -3'
miRNA:   3'- -CCGGCGCa------------UCAgGUGGUGCcCGAGCa -5'
9126 5' -60.1 NC_002512.2 + 78844 0.66 0.862859
Target:  5'- aGGaCCGCGUgacGGgCCGCCGCcucgagguGGCUCGc -3'
miRNA:   3'- -CC-GGCGCA---UCaGGUGGUGc-------CCGAGCa -5'
9126 5' -60.1 NC_002512.2 + 226505 0.66 0.862145
Target:  5'- cGCCGCG-GGUCCugCugGcGGCccugccgccguccUCGa -3'
miRNA:   3'- cCGGCGCaUCAGGugGugC-CCG-------------AGCa -5'
9126 5' -60.1 NC_002512.2 + 2679 0.66 0.862859
Target:  5'- cGCCGCcuccUGGUCCGCgCGCGGGagCGc -3'
miRNA:   3'- cCGGCGc---AUCAGGUG-GUGCCCgaGCa -5'
9126 5' -60.1 NC_002512.2 + 218222 0.66 0.862859
Target:  5'- gGGCCGCGgcGg--GCCGCGGcGC-CGa -3'
miRNA:   3'- -CCGGCGCauCaggUGGUGCC-CGaGCa -5'
9126 5' -60.1 NC_002512.2 + 93357 0.66 0.860712
Target:  5'- uGGCCaGCGUgcAGUCCcgggaggggaucggGCCGCaGGGCgCGc -3'
miRNA:   3'- -CCGG-CGCA--UCAGG--------------UGGUG-CCCGaGCa -5'
9126 5' -60.1 NC_002512.2 + 15693 0.66 0.848242
Target:  5'- gGGCgcaGCG-GGUCCuCCuccgcgacgaugACGGGCUCGa -3'
miRNA:   3'- -CCGg--CGCaUCAGGuGG------------UGCCCGAGCa -5'
9126 5' -60.1 NC_002512.2 + 99532 0.66 0.85564
Target:  5'- cGGUgaGCG--GUCCGCC-CGGGgUCGUg -3'
miRNA:   3'- -CCGg-CGCauCAGGUGGuGCCCgAGCA- -5'
9126 5' -60.1 NC_002512.2 + 203317 0.66 0.862859
Target:  5'- cGUCGCGUAGUagGCCA-GGGCcgCGa -3'
miRNA:   3'- cCGGCGCAUCAggUGGUgCCCGa-GCa -5'
9126 5' -60.1 NC_002512.2 + 73612 0.66 0.840671
Target:  5'- gGGCCacuCGgagaAGUCgaaggCGCCGcCGGGCUCGUa -3'
miRNA:   3'- -CCGGc--GCa---UCAG-----GUGGU-GCCCGAGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.