miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9126 5' -60.1 NC_002512.2 + 2109 0.68 0.720147
Target:  5'- cGGCCGCGgc-UCgGUCGCGGGCgUCGa -3'
miRNA:   3'- -CCGGCGCaucAGgUGGUGCCCG-AGCa -5'
9126 5' -60.1 NC_002512.2 + 2679 0.66 0.862859
Target:  5'- cGCCGCcuccUGGUCCGCgCGCGGGagCGc -3'
miRNA:   3'- cCGGCGc---AUCAGGUG-GUGCCCgaGCa -5'
9126 5' -60.1 NC_002512.2 + 4146 0.66 0.829791
Target:  5'- cGGCCGCGccccgacugagcgAGU-CGCCGCG-GCUCGc -3'
miRNA:   3'- -CCGGCGCa------------UCAgGUGGUGCcCGAGCa -5'
9126 5' -60.1 NC_002512.2 + 4582 0.67 0.800427
Target:  5'- gGGCgGCGgaggAGgcggCGCCGCGGGCcgCGa -3'
miRNA:   3'- -CCGgCGCa---UCag--GUGGUGCCCGa-GCa -5'
9126 5' -60.1 NC_002512.2 + 6344 0.67 0.808772
Target:  5'- cGGgCGCGgGG-CCggcggGCCGCGGGCgCGUg -3'
miRNA:   3'- -CCgGCGCaUCaGG-----UGGUGCCCGaGCA- -5'
9126 5' -60.1 NC_002512.2 + 7017 0.67 0.783339
Target:  5'- aGCCGCagGGcCUugC-CGGGCUCGUc -3'
miRNA:   3'- cCGGCGcaUCaGGugGuGCCCGAGCA- -5'
9126 5' -60.1 NC_002512.2 + 7446 0.67 0.808772
Target:  5'- uGGCCGCGgcccgGGggaagCCGCgGCGcGGCUgcCGg -3'
miRNA:   3'- -CCGGCGCa----UCa----GGUGgUGC-CCGA--GCa -5'
9126 5' -60.1 NC_002512.2 + 8551 0.67 0.800427
Target:  5'- aGGCCGCG--GUCUcggauCCACGGGUUUu- -3'
miRNA:   3'- -CCGGCGCauCAGGu----GGUGCCCGAGca -5'
9126 5' -60.1 NC_002512.2 + 10465 0.66 0.825032
Target:  5'- aGGCCGCcg---CCGCCcCGGGCgugggCGUc -3'
miRNA:   3'- -CCGGCGcaucaGGUGGuGCCCGa----GCA- -5'
9126 5' -60.1 NC_002512.2 + 11095 0.71 0.586438
Target:  5'- cGGCgGUGUcGUCCGCCuCGGcCUCGUc -3'
miRNA:   3'- -CCGgCGCAuCAGGUGGuGCCcGAGCA- -5'
9126 5' -60.1 NC_002512.2 + 13692 0.7 0.605594
Target:  5'- cGGCCGCGgcGgUgAUCACGGGCgCGa -3'
miRNA:   3'- -CCGGCGCauCaGgUGGUGCCCGaGCa -5'
9126 5' -60.1 NC_002512.2 + 15693 0.66 0.848242
Target:  5'- gGGCgcaGCG-GGUCCuCCuccgcgacgaugACGGGCUCGa -3'
miRNA:   3'- -CCGg--CGCaUCAGGuGG------------UGCCCGAGCa -5'
9126 5' -60.1 NC_002512.2 + 18543 0.68 0.720147
Target:  5'- aGGCCGCGcgcGUCCcCCAgcgccCGGGCcCGg -3'
miRNA:   3'- -CCGGCGCau-CAGGuGGU-----GCCCGaGCa -5'
9126 5' -60.1 NC_002512.2 + 24247 0.71 0.54852
Target:  5'- cGCCGaCGgcGUCCcCCGCGGGCagGa -3'
miRNA:   3'- cCGGC-GCauCAGGuGGUGCCCGagCa -5'
9126 5' -60.1 NC_002512.2 + 28056 0.67 0.816976
Target:  5'- cGGCCGCGgaaggAG-CC-CC-CGGGCgCGg -3'
miRNA:   3'- -CCGGCGCa----UCaGGuGGuGCCCGaGCa -5'
9126 5' -60.1 NC_002512.2 + 29020 0.69 0.710792
Target:  5'- gGGCgGCGUGGUCgaCGCCAUGcGGCa--- -3'
miRNA:   3'- -CCGgCGCAUCAG--GUGGUGC-CCGagca -5'
9126 5' -60.1 NC_002512.2 + 29240 0.68 0.747783
Target:  5'- gGGUCGCGcAGUCCGuCCuccgACGGGgaCGa -3'
miRNA:   3'- -CCGGCGCaUCAGGU-GG----UGCCCgaGCa -5'
9126 5' -60.1 NC_002512.2 + 29896 0.68 0.756826
Target:  5'- gGGCCGCuc-GUCC-CCGcCGGGCgcgCGg -3'
miRNA:   3'- -CCGGCGcauCAGGuGGU-GCCCGa--GCa -5'
9126 5' -60.1 NC_002512.2 + 34963 0.72 0.511402
Target:  5'- cGGCCGCGaccgGGUCCGgCugGGcCUCGc -3'
miRNA:   3'- -CCGGCGCa---UCAGGUgGugCCcGAGCa -5'
9126 5' -60.1 NC_002512.2 + 35037 0.69 0.691911
Target:  5'- aGGCCGaucggGGUCCG-CACGGGC-CGg -3'
miRNA:   3'- -CCGGCgca--UCAGGUgGUGCCCGaGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.