miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9126 5' -60.1 NC_002512.2 + 118905 0.7 0.644066
Target:  5'- gGGCgGCcucGGUCCACCGgCGGcuGCUCGUc -3'
miRNA:   3'- -CCGgCGca-UCAGGUGGU-GCC--CGAGCA- -5'
9126 5' -60.1 NC_002512.2 + 11095 0.71 0.586438
Target:  5'- cGGCgGUGUcGUCCGCCuCGGcCUCGUc -3'
miRNA:   3'- -CCGgCGCAuCAGGUGGuGCCcGAGCA- -5'
9126 5' -60.1 NC_002512.2 + 13692 0.7 0.605594
Target:  5'- cGGCCGCGgcGgUgAUCACGGGCgCGa -3'
miRNA:   3'- -CCGGCGCauCaGgUGGUGCCCGaGCa -5'
9126 5' -60.1 NC_002512.2 + 79564 0.7 0.605594
Target:  5'- cGCCGCGgcGUCCucGCCGCcGGuCUCGc -3'
miRNA:   3'- cCGGCGCauCAGG--UGGUGcCC-GAGCa -5'
9126 5' -60.1 NC_002512.2 + 113212 0.7 0.615202
Target:  5'- cGGCCaGCGgcucgcGGUCCGCCACGaGCUguaCGUa -3'
miRNA:   3'- -CCGG-CGCa-----UCAGGUGGUGCcCGA---GCA- -5'
9126 5' -60.1 NC_002512.2 + 95262 0.7 0.62482
Target:  5'- gGGCCGCGcGGcUCCugaACgGCGGGgUCGg -3'
miRNA:   3'- -CCGGCGCaUC-AGG---UGgUGCCCgAGCa -5'
9126 5' -60.1 NC_002512.2 + 118045 0.7 0.634444
Target:  5'- aGGCCGUGg---CCcguGCC-CGGGCUCGa -3'
miRNA:   3'- -CCGGCGCaucaGG---UGGuGCCCGAGCa -5'
9126 5' -60.1 NC_002512.2 + 103364 0.7 0.634444
Target:  5'- gGGCCGCGgucgGGUCguCCGaccaGaGGCUCGc -3'
miRNA:   3'- -CCGGCGCa---UCAGguGGUg---C-CCGAGCa -5'
9126 5' -60.1 NC_002512.2 + 128799 0.7 0.634444
Target:  5'- gGGUCuccgGCGUGGUCCGCgGgCGGGCccUCGa -3'
miRNA:   3'- -CCGG----CGCAUCAGGUGgU-GCCCG--AGCa -5'
9126 5' -60.1 NC_002512.2 + 75521 0.71 0.577853
Target:  5'- cGCCGCGgaagccgccaucuuGUCCcaaaaaaauCCGCGGGCUCGc -3'
miRNA:   3'- cCGGCGCau------------CAGGu--------GGUGCCCGAGCa -5'
9126 5' -60.1 NC_002512.2 + 130149 0.71 0.576901
Target:  5'- cGGCCGCGgGGcCCgGCgGCGGGC-CGg -3'
miRNA:   3'- -CCGGCGCaUCaGG-UGgUGCCCGaGCa -5'
9126 5' -60.1 NC_002512.2 + 67971 0.71 0.557936
Target:  5'- cGCCGUGgcGUCCGCCGgaggaGGGC-CGg -3'
miRNA:   3'- cCGGCGCauCAGGUGGUg----CCCGaGCa -5'
9126 5' -60.1 NC_002512.2 + 80124 0.77 0.266612
Target:  5'- cGUCGCcUGGUCCAUCGCGGGgUCGUc -3'
miRNA:   3'- cCGGCGcAUCAGGUGGUGCCCgAGCA- -5'
9126 5' -60.1 NC_002512.2 + 96295 0.74 0.423829
Target:  5'- uGCCGCGggccgCCGCCGCGGGCgggcCGg -3'
miRNA:   3'- cCGGCGCauca-GGUGGUGCCCGa---GCa -5'
9126 5' -60.1 NC_002512.2 + 95858 0.73 0.44919
Target:  5'- uGGCCGgGUGGUCCGCCACcGcGCagaucuUCGUc -3'
miRNA:   3'- -CCGGCgCAUCAGGUGGUGcC-CG------AGCA- -5'
9126 5' -60.1 NC_002512.2 + 85260 0.73 0.48426
Target:  5'- cGCCGCGUGG-CCGCCACGuccagcgcGGCgCGg -3'
miRNA:   3'- cCGGCGCAUCaGGUGGUGC--------CCGaGCa -5'
9126 5' -60.1 NC_002512.2 + 34963 0.72 0.511402
Target:  5'- cGGCCGCGaccgGGUCCGgCugGGcCUCGc -3'
miRNA:   3'- -CCGGCGCa---UCAGGUgGugCCcGAGCa -5'
9126 5' -60.1 NC_002512.2 + 24247 0.71 0.54852
Target:  5'- cGCCGaCGgcGUCCcCCGCGGGCagGa -3'
miRNA:   3'- cCGGC-GCauCAGGuGGUGCCCGagCa -5'
9126 5' -60.1 NC_002512.2 + 108745 0.71 0.54852
Target:  5'- cGGCCgGCGUcucGG-CCGCCgucgACGGGUUCGg -3'
miRNA:   3'- -CCGG-CGCA---UCaGGUGG----UGCCCGAGCa -5'
9126 5' -60.1 NC_002512.2 + 72867 0.71 0.557936
Target:  5'- gGGCCGCGUcG-CCGuugUCGCGGGgCUCGg -3'
miRNA:   3'- -CCGGCGCAuCaGGU---GGUGCCC-GAGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.