miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9126 5' -60.1 NC_002512.2 + 103018 1.09 0.00204
Target:  5'- aGGCCGCGUAGUCCACCACGGGCUCGUa -3'
miRNA:   3'- -CCGGCGCAUCAGGUGGUGCCCGAGCA- -5'
9126 5' -60.1 NC_002512.2 + 101961 0.78 0.232822
Target:  5'- uGGcCCGCG-GGcCCGCCgGCGGGCUCGUg -3'
miRNA:   3'- -CC-GGCGCaUCaGGUGG-UGCCCGAGCA- -5'
9126 5' -60.1 NC_002512.2 + 80124 0.77 0.266612
Target:  5'- cGUCGCcUGGUCCAUCGCGGGgUCGUc -3'
miRNA:   3'- cCGGCGcAUCAGGUGGUGCCCgAGCA- -5'
9126 5' -60.1 NC_002512.2 + 219050 0.77 0.297713
Target:  5'- cGGCCGCGgcgcggGGcUCC-CCGCGGGCUuCGa -3'
miRNA:   3'- -CCGGCGCa-----UC-AGGuGGUGCCCGA-GCa -5'
9126 5' -60.1 NC_002512.2 + 131990 0.76 0.338653
Target:  5'- aGGUCGCGUGGgCCGCCcCGGGCgcCGg -3'
miRNA:   3'- -CCGGCGCAUCaGGUGGuGCCCGa-GCa -5'
9126 5' -60.1 NC_002512.2 + 190075 0.75 0.360606
Target:  5'- uGGCCGCGgccGGUCa---GCGGGCUCGg -3'
miRNA:   3'- -CCGGCGCa--UCAGguggUGCCCGAGCa -5'
9126 5' -60.1 NC_002512.2 + 110518 0.75 0.360606
Target:  5'- cGCCGCGUcGUCCACCaucccGCGGGCg--- -3'
miRNA:   3'- cCGGCGCAuCAGGUGG-----UGCCCGagca -5'
9126 5' -60.1 NC_002512.2 + 96205 0.75 0.383532
Target:  5'- cGGCCGCGaGGUCgGCCACGgcGGCcgCGg -3'
miRNA:   3'- -CCGGCGCaUCAGgUGGUGC--CCGa-GCa -5'
9126 5' -60.1 NC_002512.2 + 117798 0.74 0.391386
Target:  5'- --aCGCGUgGGUCCGCCaggcgACGGGCUCGc -3'
miRNA:   3'- ccgGCGCA-UCAGGUGG-----UGCCCGAGCa -5'
9126 5' -60.1 NC_002512.2 + 96295 0.74 0.423829
Target:  5'- uGCCGCGggccgCCGCCGCGGGCgggcCGg -3'
miRNA:   3'- cCGGCGCauca-GGUGGUGCCCGa---GCa -5'
9126 5' -60.1 NC_002512.2 + 95858 0.73 0.44919
Target:  5'- uGGCCGgGUGGUCCGCCACcGcGCagaucuUCGUc -3'
miRNA:   3'- -CCGGCgCAUCAGGUGGUGcC-CG------AGCA- -5'
9126 5' -60.1 NC_002512.2 + 91872 0.73 0.466555
Target:  5'- aGGCCGCc--GUCCGgCGCGGGCggCGg -3'
miRNA:   3'- -CCGGCGcauCAGGUgGUGCCCGa-GCa -5'
9126 5' -60.1 NC_002512.2 + 85260 0.73 0.48426
Target:  5'- cGCCGCGUGG-CCGCCACGuccagcgcGGCgCGg -3'
miRNA:   3'- cCGGCGCAUCaGGUGGUGC--------CCGaGCa -5'
9126 5' -60.1 NC_002512.2 + 223368 0.73 0.48426
Target:  5'- cGCCGaucCGgcGUCUAUCACGGGCUCc- -3'
miRNA:   3'- cCGGC---GCauCAGGUGGUGCCCGAGca -5'
9126 5' -60.1 NC_002512.2 + 132521 0.72 0.511402
Target:  5'- cGGCCGcCGcGGUCCccgcuCCGCGGGCggCGc -3'
miRNA:   3'- -CCGGC-GCaUCAGGu----GGUGCCCGa-GCa -5'
9126 5' -60.1 NC_002512.2 + 34963 0.72 0.511402
Target:  5'- cGGCCGCGaccgGGUCCGgCugGGcCUCGc -3'
miRNA:   3'- -CCGGCGCa---UCAGGUgGugCCcGAGCa -5'
9126 5' -60.1 NC_002512.2 + 205034 0.72 0.539153
Target:  5'- gGGCCGCGUccgCCgccgaccgGCCGCGGGCcCGg -3'
miRNA:   3'- -CCGGCGCAucaGG--------UGGUGCCCGaGCa -5'
9126 5' -60.1 NC_002512.2 + 222234 0.71 0.54852
Target:  5'- gGGCCGCGUccuucgUCGCCgugGCGGGuCUCGUg -3'
miRNA:   3'- -CCGGCGCAuca---GGUGG---UGCCC-GAGCA- -5'
9126 5' -60.1 NC_002512.2 + 108745 0.71 0.54852
Target:  5'- cGGCCgGCGUcucGG-CCGCCgucgACGGGUUCGg -3'
miRNA:   3'- -CCGG-CGCA---UCaGGUGG----UGCCCGAGCa -5'
9126 5' -60.1 NC_002512.2 + 24247 0.71 0.54852
Target:  5'- cGCCGaCGgcGUCCcCCGCGGGCagGa -3'
miRNA:   3'- cCGGC-GCauCAGGuGGUGCCCGagCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.