miRNA display CGI


Results 1 - 20 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9134 3' -65.1 NC_002512.2 + 53117 0.66 0.664316
Target:  5'- gCUgUCCCGAGCCCUgcagGCGUCCgaagcgaCCCu -3'
miRNA:   3'- gGAgGGGGCUUGGGG----CGCGGGa------GGGu -5'
9134 3' -65.1 NC_002512.2 + 79839 0.66 0.664316
Target:  5'- cCCUCCCgccCCGucguCCCCG-GCCC-CCUc -3'
miRNA:   3'- -GGAGGG---GGCuu--GGGGCgCGGGaGGGu -5'
9134 3' -65.1 NC_002512.2 + 140004 0.66 0.664316
Target:  5'- aUCUgCCCUCGAcauCCCCGUcCCgUCCCc -3'
miRNA:   3'- -GGA-GGGGGCUu--GGGGCGcGGgAGGGu -5'
9134 3' -65.1 NC_002512.2 + 1101 0.66 0.664316
Target:  5'- aCCUCCUUCGucCCCUGCGUCUUgCa- -3'
miRNA:   3'- -GGAGGGGGCuuGGGGCGCGGGAgGgu -5'
9134 3' -65.1 NC_002512.2 + 104889 0.66 0.664316
Target:  5'- cCCUggCCCCGAugcACUCCGaCGCCCugcagggcagUCCCu -3'
miRNA:   3'- -GGAg-GGGGCU---UGGGGC-GCGGG----------AGGGu -5'
9134 3' -65.1 NC_002512.2 + 1374 0.66 0.664316
Target:  5'- gCCUCCgUCucuCCuCCGCGuCCCUCUCGc -3'
miRNA:   3'- -GGAGGgGGcuuGG-GGCGC-GGGAGGGU- -5'
9134 3' -65.1 NC_002512.2 + 74982 0.66 0.664316
Target:  5'- uUUCCCCC--ACCaaGCaCCCUCCCc -3'
miRNA:   3'- gGAGGGGGcuUGGggCGcGGGAGGGu -5'
9134 3' -65.1 NC_002512.2 + 6151 0.66 0.664316
Target:  5'- aCCUCCacgaCGGucuCCCgGuCGUCCUCCCc -3'
miRNA:   3'- -GGAGGgg--GCUu--GGGgC-GCGGGAGGGu -5'
9134 3' -65.1 NC_002512.2 + 97300 0.66 0.655056
Target:  5'- gUCUgCUCgCCGAACCCCuggccGCGCCCg-CCGg -3'
miRNA:   3'- -GGA-GGG-GGCUUGGGG-----CGCGGGagGGU- -5'
9134 3' -65.1 NC_002512.2 + 155718 0.66 0.655056
Target:  5'- gCCUCCaCCUGGAUCCCGagcgGaCCCUCg-- -3'
miRNA:   3'- -GGAGG-GGGCUUGGGGCg---C-GGGAGggu -5'
9134 3' -65.1 NC_002512.2 + 172826 0.66 0.655056
Target:  5'- gCCUa--CCGuucGCCCgGCGCCC-CCCGg -3'
miRNA:   3'- -GGAgggGGCu--UGGGgCGCGGGaGGGU- -5'
9134 3' -65.1 NC_002512.2 + 2941 0.66 0.655056
Target:  5'- gCCUCCCgCGcGGCCUUggcgagcuugaGCGCCUUCUCGc -3'
miRNA:   3'- -GGAGGGgGC-UUGGGG-----------CGCGGGAGGGU- -5'
9134 3' -65.1 NC_002512.2 + 24387 0.66 0.655056
Target:  5'- uCgUCCUCCGcGACgCCGUcguccGCCuCUCCCAg -3'
miRNA:   3'- -GgAGGGGGC-UUGgGGCG-----CGG-GAGGGU- -5'
9134 3' -65.1 NC_002512.2 + 75084 0.66 0.655056
Target:  5'- gCCUCCgUCGcucACuCCCGCuCCCUCCgAg -3'
miRNA:   3'- -GGAGGgGGCu--UG-GGGCGcGGGAGGgU- -5'
9134 3' -65.1 NC_002512.2 + 76508 0.66 0.645781
Target:  5'- aCgUCgCUCCGGACCgccagCCGcCGCCCagCCCAg -3'
miRNA:   3'- -GgAG-GGGGCUUGG-----GGC-GCGGGa-GGGU- -5'
9134 3' -65.1 NC_002512.2 + 135227 0.66 0.645781
Target:  5'- --cCCCCCG-GCCCCGgGCCg-CCUc -3'
miRNA:   3'- ggaGGGGGCuUGGGGCgCGGgaGGGu -5'
9134 3' -65.1 NC_002512.2 + 141093 0.66 0.645781
Target:  5'- gCCUUCUUCGucaaguACCCCGUcccGCCgUCCCc -3'
miRNA:   3'- -GGAGGGGGCu-----UGGGGCG---CGGgAGGGu -5'
9134 3' -65.1 NC_002512.2 + 148176 0.66 0.645781
Target:  5'- gCUCCgCCGGcACUUCGaCaCCCUCCCGg -3'
miRNA:   3'- gGAGGgGGCU-UGGGGC-GcGGGAGGGU- -5'
9134 3' -65.1 NC_002512.2 + 30356 0.66 0.636497
Target:  5'- aCUUCCCCGAACgauuCCUGuCGCCCgacgaCCUc -3'
miRNA:   3'- gGAGGGGGCUUG----GGGC-GCGGGa----GGGu -5'
9134 3' -65.1 NC_002512.2 + 107134 0.66 0.636497
Target:  5'- uCCUCCggCCCGGgcGCCCCcaucaGCGCgUUUCCGc -3'
miRNA:   3'- -GGAGG--GGGCU--UGGGG-----CGCGgGAGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.