miRNA display CGI


Results 1 - 20 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9134 3' -65.1 NC_002512.2 + 229820 0.67 0.562601
Target:  5'- aCCUCCCCCcccuuCCCCuccuccCGCUCaUCCCGc -3'
miRNA:   3'- -GGAGGGGGcuu--GGGGc-----GCGGG-AGGGU- -5'
9134 3' -65.1 NC_002512.2 + 229800 0.67 0.565342
Target:  5'- cUCUCCCCCcgccgccucucgccuCCUCGCGCCCgcgaCCGa -3'
miRNA:   3'- -GGAGGGGGcuu------------GGGGCGCGGGag--GGU- -5'
9134 3' -65.1 NC_002512.2 + 229738 0.71 0.341807
Target:  5'- uCCUCCgCCGGcGCCCCGCccgGCUC-CCCGg -3'
miRNA:   3'- -GGAGGgGGCU-UGGGGCG---CGGGaGGGU- -5'
9134 3' -65.1 NC_002512.2 + 229692 0.75 0.213387
Target:  5'- cUCUCCgCCCGGGCCCCuucuCGCCCccgUCCCu -3'
miRNA:   3'- -GGAGG-GGGCUUGGGGc---GCGGG---AGGGu -5'
9134 3' -65.1 NC_002512.2 + 227061 0.67 0.562601
Target:  5'- gCCgUCgUCCGGG-CCCGCGCCCgcgccgggUCCCGc -3'
miRNA:   3'- -GG-AGgGGGCUUgGGGCGCGGG--------AGGGU- -5'
9134 3' -65.1 NC_002512.2 + 226501 0.67 0.553491
Target:  5'- cCCUCgCCgCGggUCCUGCuggcgGCCCUgCCGc -3'
miRNA:   3'- -GGAGgGG-GCuuGGGGCG-----CGGGAgGGU- -5'
9134 3' -65.1 NC_002512.2 + 226275 0.67 0.590151
Target:  5'- gCUCacgaCCgCGGGCUCUGCGCCUgucCCCGa -3'
miRNA:   3'- gGAGg---GG-GCUUGGGGCGCGGGa--GGGU- -5'
9134 3' -65.1 NC_002512.2 + 225886 0.68 0.491197
Target:  5'- aCUCCUgCGAcGCCCCcCG-CCUCCCGa -3'
miRNA:   3'- gGAGGGgGCU-UGGGGcGCgGGAGGGU- -5'
9134 3' -65.1 NC_002512.2 + 225663 0.71 0.341807
Target:  5'- gCUCgacgUCCCGcuCCCCGCgGCCgCUCCCAc -3'
miRNA:   3'- gGAG----GGGGCuuGGGGCG-CGG-GAGGGU- -5'
9134 3' -65.1 NC_002512.2 + 225436 0.69 0.448752
Target:  5'- gCCgaCgCCGAcCCCCGCGCCCggcacCCCGc -3'
miRNA:   3'- -GGagGgGGCUuGGGGCGCGGGa----GGGU- -5'
9134 3' -65.1 NC_002512.2 + 225374 0.69 0.440507
Target:  5'- uCCUCCUCC--ACCCuCGCGUCCaUCCUc -3'
miRNA:   3'- -GGAGGGGGcuUGGG-GCGCGGG-AGGGu -5'
9134 3' -65.1 NC_002512.2 + 223986 0.66 0.608652
Target:  5'- -aUCCCCCGcGCgCCC-CGCCgUCCaCGa -3'
miRNA:   3'- ggAGGGGGCuUG-GGGcGCGGgAGG-GU- -5'
9134 3' -65.1 NC_002512.2 + 223541 0.74 0.223104
Target:  5'- cCCgcggCCCgCG-GCCCCGCGCCCggUCCCc -3'
miRNA:   3'- -GGa---GGGgGCuUGGGGCGCGGG--AGGGu -5'
9134 3' -65.1 NC_002512.2 + 223476 0.69 0.482554
Target:  5'- gCCUUCCCC-AGCgCCGcCGCCgcCUCCCu -3'
miRNA:   3'- -GGAGGGGGcUUGgGGC-GCGG--GAGGGu -5'
9134 3' -65.1 NC_002512.2 + 222606 0.81 0.087865
Target:  5'- uCCggCCCCCgGGGCCUCGCGCCCgaUCCCGa -3'
miRNA:   3'- -GGa-GGGGG-CUUGGGGCGCGGG--AGGGU- -5'
9134 3' -65.1 NC_002512.2 + 222444 0.75 0.199495
Target:  5'- gCUUCCCCCGGgccgcggccaACCUCGCGCCggCCCu -3'
miRNA:   3'- -GGAGGGGGCU----------UGGGGCGCGGgaGGGu -5'
9134 3' -65.1 NC_002512.2 + 222152 0.72 0.301954
Target:  5'- uCCgCCCCCGAggaccgcuAUCCCGaCGCCUacUCCCGg -3'
miRNA:   3'- -GGaGGGGGCU--------UGGGGC-GCGGG--AGGGU- -5'
9134 3' -65.1 NC_002512.2 + 222083 0.71 0.35591
Target:  5'- uCCgCuCCCCGGACCCCGUuCCCggacuuccucgaUCCCAc -3'
miRNA:   3'- -GGaG-GGGGCUUGGGGCGcGGG------------AGGGU- -5'
9134 3' -65.1 NC_002512.2 + 219999 0.66 0.636497
Target:  5'- gCUCCCCCucGCCCgGCgggucgagagGCCgCUCCg- -3'
miRNA:   3'- gGAGGGGGcuUGGGgCG----------CGG-GAGGgu -5'
9134 3' -65.1 NC_002512.2 + 219442 0.72 0.328113
Target:  5'- gCCUCCUCCGcgcCCCCGUGCCCga-CGg -3'
miRNA:   3'- -GGAGGGGGCuu-GGGGCGCGGGaggGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.