miRNA display CGI


Results 1 - 20 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9134 3' -65.1 NC_002512.2 + 104889 0.66 0.664316
Target:  5'- cCCUggCCCCGAugcACUCCGaCGCCCugcagggcagUCCCu -3'
miRNA:   3'- -GGAg-GGGGCU---UGGGGC-GCGGG----------AGGGu -5'
9134 3' -65.1 NC_002512.2 + 147532 0.66 0.608652
Target:  5'- cCCUCCgCCGc-CCCCGCacGCCCaccgcuaCCCGc -3'
miRNA:   3'- -GGAGGgGGCuuGGGGCG--CGGGa------GGGU- -5'
9134 3' -65.1 NC_002512.2 + 95865 0.66 0.608652
Target:  5'- uCCUCCCa-GGGCCgCGCGCCgaggaUCUCGa -3'
miRNA:   3'- -GGAGGGggCUUGGgGCGCGGg----AGGGU- -5'
9134 3' -65.1 NC_002512.2 + 93904 1.09 0.000861
Target:  5'- cCCUCCCCCGAACCCCGCGCCCUCCCAg -3'
miRNA:   3'- -GGAGGGGGCUUGGGGCGCGGGAGGGU- -5'
9134 3' -65.1 NC_002512.2 + 155718 0.66 0.655056
Target:  5'- gCCUCCaCCUGGAUCCCGagcgGaCCCUCg-- -3'
miRNA:   3'- -GGAGG-GGGCUUGGGGCg---C-GGGAGggu -5'
9134 3' -65.1 NC_002512.2 + 75084 0.66 0.655056
Target:  5'- gCCUCCgUCGcucACuCCCGCuCCCUCCgAg -3'
miRNA:   3'- -GGAGGgGGCu--UG-GGGCGcGGGAGGgU- -5'
9134 3' -65.1 NC_002512.2 + 219999 0.66 0.636497
Target:  5'- gCUCCCCCucGCCCgGCgggucgagagGCCgCUCCg- -3'
miRNA:   3'- gGAGGGGGcuUGGGgCG----------CGG-GAGGgu -5'
9134 3' -65.1 NC_002512.2 + 218326 0.66 0.636497
Target:  5'- gCUCCCCguAGCCCU-CGUCCUCCUc -3'
miRNA:   3'- gGAGGGGgcUUGGGGcGCGGGAGGGu -5'
9134 3' -65.1 NC_002512.2 + 108159 0.66 0.62721
Target:  5'- aCUCCUCCGGcguCgCCgGCGCCUUCUg- -3'
miRNA:   3'- gGAGGGGGCUu--G-GGgCGCGGGAGGgu -5'
9134 3' -65.1 NC_002512.2 + 151216 0.66 0.608652
Target:  5'- aCUUaggCUCCGAGCCCCgGCGCCggCUCGa -3'
miRNA:   3'- gGAG---GGGGCUUGGGG-CGCGGgaGGGU- -5'
9134 3' -65.1 NC_002512.2 + 128112 0.66 0.617927
Target:  5'- uCCUCCuCCCGAGgguUCCCGCcgacggagcGCCCgggCCAc -3'
miRNA:   3'- -GGAGG-GGGCUU---GGGGCG---------CGGGag-GGU- -5'
9134 3' -65.1 NC_002512.2 + 111571 0.66 0.62721
Target:  5'- uCCUCCCUCucgucguCCgCGCGCUCggCCCGg -3'
miRNA:   3'- -GGAGGGGGcuu----GGgGCGCGGGa-GGGU- -5'
9134 3' -65.1 NC_002512.2 + 140004 0.66 0.664316
Target:  5'- aUCUgCCCUCGAcauCCCCGUcCCgUCCCc -3'
miRNA:   3'- -GGA-GGGGGCUu--GGGGCGcGGgAGGGu -5'
9134 3' -65.1 NC_002512.2 + 223986 0.66 0.608652
Target:  5'- -aUCCCCCGcGCgCCC-CGCCgUCCaCGa -3'
miRNA:   3'- ggAGGGGGCuUG-GGGcGCGGgAGG-GU- -5'
9134 3' -65.1 NC_002512.2 + 1101 0.66 0.664316
Target:  5'- aCCUCCUUCGucCCCUGCGUCUUgCa- -3'
miRNA:   3'- -GGAGGGGGCuuGGGGCGCGGGAgGgu -5'
9134 3' -65.1 NC_002512.2 + 109276 0.66 0.635568
Target:  5'- gCCUCCCgcucucaCCG-GCgCCCGCuCUCUCCCu -3'
miRNA:   3'- -GGAGGG-------GGCuUG-GGGCGcGGGAGGGu -5'
9134 3' -65.1 NC_002512.2 + 211821 0.66 0.608652
Target:  5'- aCCUauuucgacUUCCUGGACCCCGgGCUCUCggCCGa -3'
miRNA:   3'- -GGA--------GGGGGCUUGGGGCgCGGGAG--GGU- -5'
9134 3' -65.1 NC_002512.2 + 113379 0.66 0.608652
Target:  5'- uCUUCCUgUGGACCagggcguugcgCGCGCUCUCCCu -3'
miRNA:   3'- -GGAGGGgGCUUGGg----------GCGCGGGAGGGu -5'
9134 3' -65.1 NC_002512.2 + 172826 0.66 0.655056
Target:  5'- gCCUa--CCGuucGCCCgGCGCCC-CCCGg -3'
miRNA:   3'- -GGAgggGGCu--UGGGgCGCGGGaGGGU- -5'
9134 3' -65.1 NC_002512.2 + 148176 0.66 0.645781
Target:  5'- gCUCCgCCGGcACUUCGaCaCCCUCCCGg -3'
miRNA:   3'- gGAGGgGGCU-UGGGGC-GcGGGAGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.