miRNA display CGI


Results 1 - 20 of 219 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9134 5' -52.3 NC_002512.2 + 194207 0.66 0.996386
Target:  5'- aCCUC-GUcuGgAUGCGGAGGGAcuucGUGCCg -3'
miRNA:   3'- -GGAGuCG--UgUGCGCCUUCUUc---UACGG- -5'
9134 5' -52.3 NC_002512.2 + 202500 0.66 0.993495
Target:  5'- aCUCAGCAguucgGCgGCGGAggcGGAGGcgGCg -3'
miRNA:   3'- gGAGUCGUg----UG-CGCCU---UCUUCuaCGg -5'
9134 5' -52.3 NC_002512.2 + 151035 0.66 0.993495
Target:  5'- aCCUCgaGGCGgcggcccguCACGCGGuccucgacggcGGggGAUGCg -3'
miRNA:   3'- -GGAG--UCGU---------GUGCGCCu----------UCuuCUACGg -5'
9134 5' -52.3 NC_002512.2 + 93939 1.15 0.004293
Target:  5'- cCCUCAGCACACGCGGAAGAAGAUGCCg -3'
miRNA:   3'- -GGAGUCGUGUGCGCCUUCUUCUACGG- -5'
9134 5' -52.3 NC_002512.2 + 193871 0.66 0.995788
Target:  5'- -aUCGGaCGCggcgguggacgACGCGGGAGcGGGUcGCCg -3'
miRNA:   3'- ggAGUC-GUG-----------UGCGCCUUCuUCUA-CGG- -5'
9134 5' -52.3 NC_002512.2 + 96609 0.66 0.995788
Target:  5'- aCCggAGCGCggagACGCGGggGAGG--GCg -3'
miRNA:   3'- -GGagUCGUG----UGCGCCuuCUUCuaCGg -5'
9134 5' -52.3 NC_002512.2 + 222396 0.66 0.995788
Target:  5'- uCCUCauggAGCGC-CGCGGcuucGGcGGggGCCg -3'
miRNA:   3'- -GGAG----UCGUGuGCGCCu---UCuUCuaCGG- -5'
9134 5' -52.3 NC_002512.2 + 173025 0.66 0.995788
Target:  5'- gCUCgcGGUACGCGgaGGggGggGuguacgagGCCa -3'
miRNA:   3'- gGAG--UCGUGUGCg-CCuuCuuCua------CGG- -5'
9134 5' -52.3 NC_002512.2 + 223830 0.66 0.995112
Target:  5'- --aCGGCGCGucggaGgGGAAGGAGGagGCCg -3'
miRNA:   3'- ggaGUCGUGUg----CgCCUUCUUCUa-CGG- -5'
9134 5' -52.3 NC_002512.2 + 227529 0.66 0.993495
Target:  5'- uCCggCGGCGgACG-GGggGAGGAggGCg -3'
miRNA:   3'- -GGa-GUCGUgUGCgCCuuCUUCUa-CGg -5'
9134 5' -52.3 NC_002512.2 + 131813 0.66 0.99435
Target:  5'- gCUCGG-ACACGUcccGGGAGAcGA-GCCg -3'
miRNA:   3'- gGAGUCgUGUGCG---CCUUCUuCUaCGG- -5'
9134 5' -52.3 NC_002512.2 + 72896 0.66 0.995392
Target:  5'- uCCgCAGCAUcCG-GGGAGAGGAUuggaugaguuaccugGCCg -3'
miRNA:   3'- -GGaGUCGUGuGCgCCUUCUUCUA---------------CGG- -5'
9134 5' -52.3 NC_002512.2 + 92350 0.66 0.996386
Target:  5'- aCUCGaacUACACgGUGG-AGAAGGUGCUg -3'
miRNA:   3'- gGAGUc--GUGUG-CGCCuUCUUCUACGG- -5'
9134 5' -52.3 NC_002512.2 + 128851 0.66 0.993495
Target:  5'- gCUCgGGCGcCGCGCGGGcccuGGUGCUg -3'
miRNA:   3'- gGAG-UCGU-GUGCGCCUucuuCUACGG- -5'
9134 5' -52.3 NC_002512.2 + 113936 0.66 0.996386
Target:  5'- aCUCGGCcagcgagagcagGC-CGCGGAAGAc-GUGCg -3'
miRNA:   3'- gGAGUCG------------UGuGCGCCUUCUucUACGg -5'
9134 5' -52.3 NC_002512.2 + 89082 0.66 0.995788
Target:  5'- ---aGGUACAUgGCGGA-GAAGAgcagGCCg -3'
miRNA:   3'- ggagUCGUGUG-CGCCUuCUUCUa---CGG- -5'
9134 5' -52.3 NC_002512.2 + 120859 0.66 0.993495
Target:  5'- cCCUCGaacGCGC-CGCGGGuccgcAGGAcGAcGCCg -3'
miRNA:   3'- -GGAGU---CGUGuGCGCCU-----UCUU-CUaCGG- -5'
9134 5' -52.3 NC_002512.2 + 190947 0.66 0.993495
Target:  5'- cCCg-GGCGCACGCGGgcGcccgccgcGGcgGCCc -3'
miRNA:   3'- -GGagUCGUGUGCGCCuuCu-------UCuaCGG- -5'
9134 5' -52.3 NC_002512.2 + 216634 0.66 0.996386
Target:  5'- aCCUCguGGUagaACACGCGGAAGucGuc-CCg -3'
miRNA:   3'- -GGAG--UCG---UGUGCGCCUUCuuCuacGG- -5'
9134 5' -52.3 NC_002512.2 + 223912 0.66 0.995788
Target:  5'- --gCGGCGCGgGCGaGAGGucGA-GCCg -3'
miRNA:   3'- ggaGUCGUGUgCGC-CUUCuuCUaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.